1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCAAGGTCAAATGCCAATAGTCAAGCATCCTGCTATGTGGTAAATCGTCATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAGgtgcagttgatcttaagtatatcatttttcctgtttgttatgtattttaacttgaatatgttgttaagcaaggaagataatgcatgcttaacttagtaca...
species | Glycine max |
transcript | GLYMA19G30880.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAG CTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGGEST: gi|209700821|gb|BW661252.1|BW661252
genomic: ATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAGgtgcagttga ... aatgcttcagCTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGG
EST: ATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAG CTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGGEST: gi|38193778|gb|CF922984.1|CF922984
genomic: ATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAGgtgcagttga ... aatgcttcagCTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGG
EST: ATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAG CTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGG
genomic: ATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAGgtgcagttga ... aatgcttcagCTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAAGGTCAAATGCCAATAGTCAAGCATCCTGCTATGTGGTAAATCGTCATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAGgtgcagttgatcttaagtatatcatttttcctgtttgttatgtattttaacttgaatatgttgttaagcaaggaagataatgcatgcttaacttagtaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG