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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTGGCTCTGGTTCAACCAAAGTTTTGAAGGACCATATGAAGTCCTCTGTAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTCGTAGgtaattatccggatattctgacattccttctgaattttactctgtaattgtataggttgcatgatagggatgaaaatgttacattaacgctttctattga...

Basic information

species Glycine max
transcript GLYMA19G30680.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G30680.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0040g00870.t01 (Vitis vinifera), 5'ss of exon 1
---GCTCTTGGCTCTGGTTCAACCAAAGTTTTGAAGGACCATATGAAGTCCTCTGTAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTCGTAGgtaattatccggatattctgacattccttctgaattttactctgtaattgtataggttgcatgatagggatgaaaa-----tgttacattaacgctttctattga
   |||||||  ||||||||  |  |   ||| || ||  || || || || |   ||| ||||||||| |||||||||||||||||||||| || | ||||||| ||   | | |      |  | | | ||     |  ||     || | |  |    || ||||  | | ||     | | ||| ||| ||| |   | ||
AAGGCTCTTGCATCTGGTTCTTCAGATACTTTAAAAGAAAATTTGCAGCCCACGTCAACCGATGGTAAACTGCAACAGTGGTTCCGTGAAGGCCTTGCAGgtaatgattgtggtctctctctacacatacaga----cagcctacttgtgcacaattcatgtgttaggcctcataaatttttatgacactaa-gctatgcttaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299750|gb|FG990045.1|FG990045
EST:     CCCTGTAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTCGTAG                         GGCCAATGTTAAGTTCTGGCATGTGCACTGAAGTTTTCCAGTTTGATGTTT
genomic: CTCTGTAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTCGTAGgtaattatcc ... cttgatgcagGGCCAATGTTAAGTTCTGGCATGTGCACTGAAGTTTTCCAGTTTGATGTTT
EST: gi|192299335|gb|FG988706.1|FG988706
EST:     CTCTGTAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTCGTAG                         GGCCAATGTTAAGTTCTGGCATGTGCACTGAAGTTTTCCAGTTTGATGTTT
genomic: CTCTGTAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTCGTAGgtaattatcc ... cttgatgcagGGCCAATGTTAAGTTCTGGCATGTGCACTGAAGTTTTCCAGTTTGATGTTT