Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTGCACAGCTGAGCCATAATGTTGCTAAGTTCACATTTGCACTTCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccgttgcctgatatttttcttgtttctgttttccttgtcaatttaattagttcattttgtgtttagtttagtatctgcaaaatttgttctcttaatg...

Basic information

species Glycine max
transcript GLYMA19G29720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g40990.1 (Oryza sativa), 5'ss of exon 2
AGCGTGCACAGCTGAGCCATAATGTTGCTAAGTTCACATTTGCACTTCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccg--ttgcctgatat-ttttcttgtttctgttttccttgtcaatttaattagttcattttgtgtttagtttagtatctgcaaaatttgttctcttaatg
||      ||| | || |||||||| || ||||||| |||||| || ||||| ||| | |||||  |||| ||||||||||| ||||| || |||||||||||  |  ||   | |||| | |||||| |||| |  |   | |   ||   ||   | |    |  ||  ||| | | |   |      ||||||   |   
AGAAGAGGCAGATCAGTCATAATGTGGCCAAGTTCAGATTTGCTCTACCAACCCCTGCTTCTGTGCTGGGGCTTCCAATTGGCCAACATATCAGTTGCAGgttgggggttatatcatatgtcttcttgcttctctcatatcttttgtttctctt---ttacaaagaattgtgttaaatgttatct---cctgttcttgcag--

upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g59930.2 (Oryza sativa), 5'ss of exon 2
AGCGTGCACAGCTGAGCCATAATGTTGCTAAGTTCACATTTGCACTTCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccgttgcctgatatttttcttgtttctgttttccttgtcaatttaattagttcattttgtgtttagtttagtatctgcaaaatttgttctcttaatg
|       ||  | || ||||| || || |  |||| |||||| |||||||| || || ||||| ||||| ||||||||||| || || || |||||||||||  | | ||     || | | | | | | |     |||  |   |      ||  ||||    | | ||    |  || |     | |||| |||   
AAAAGAAGCAAATAAGTCATAACGTGGCCAGATTCAAATTTGCTCTTCCAACTCCAACCTCTGTATTGGGCCTTCCAATTGGTCAGCATATCAGTTGCAGgtttggattcc--gccttatgcctttctttatgaagtttgctaccct------tttttttttacataaattggaaaaatgtatgtgctattcttttag--

upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G157263_T01 (Zea mays), 5'ss of exon 2
AGCGTGCACAGCTGAGCCATAATGTTGCTAAGTTCACATTTGCACTTCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccg-ttgcctgatatttttcttgtttctgttttcctt-gtcaatttaattagttcattttgtgtttagt-ttagtatctgcaaaatttgttctcttaatg
||      |||||||| ||||||||||| |||||||  ||||| || ||||||||||| ||||| |||||||||||||| || || || ||||| ||||||||  |  |    | ||    | |||    ||  |||    | ||      ||| |     ||   || ||| ||| | | |  |        ||  |  |  
AGAAGAGGCAGCTGAGTCATAATGTTGCCAAGTTCAAGTTTGCGCTCCCAACACCTACTTCTGTATTGGGTCTTCCAATCGGACAGCATATAAGCTGCAGgtttgggctcttcgttaccacttttgaaagtgggttcgaaaggcacagccgttactctgaatttctttcagtcttactgtgtctacctcccaatcgttccag-

upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G17770.1 (Arabidopsis thaliana), 5'ss of exon 2
AGCGTGCACAGCTGAGCCATAATGTTGCTAAGTTCACATTTGCACTTCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccgttgcctgatatttt----tcttgtttctgttttccttgtcaatttaattagttcattttgtgtttag--tttagtatctgcaaaatttgttctcttaatg
|| |    ||||| || || ||||| || ||||||   |||| ||| |||||  |||| ||||| ||||||||||| ||||| |||||||| |||||||||||  ||   |  |  | ||    || | | | ||||||  | | ||||      | | |     ||   |||  | |   | ||    ||  ||  || | |   
AGAGACATCAGCTTAGTCACAATGTGGCCAAGTTCGTTTTTGAACTCCCAACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcctcgtacttcttattatcctctctgtgttttgttcgccaatc--gccactcctgccagttgctagattctgaaacctatccaaaatgg-ctgtga---

upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 2
AGCGTGCACAGCTGAGCCATAATGTTGCTAAGTTCACATTTGCACTTCCAACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccgttgcctga--tatttttcttgtttctgttttccttgtcaatttaattagttcattttgtgtttagtt--tagtatctgcaaaatttgttctcttaatg
||||  ||||||| ||||||||||| || ||||||| |||||  ||||| || || ||||| || ||||| || |||||||| ||||| |||||||||| || | ||||  |||  |  || | | || | || | |       || |   |        | | | |||| ||  ||||   ||   |  | |   | |     
AGCGCACACAGCTCAGCCATAATGTAGCAAAGTTCAGATTTGATCTTCCTACTCCCACATCAGTGTTGGGCCTCCCAATTGGACAACATATAAGTTGCAAgtacggttggttgagttggttctgtcgtgtttgctctatgatcaaactcggtctaaatcctatctttttaattcttagttcttgtttacatagcattttc----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7640420|gb|AW734722.1|AW734722
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAT                         GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccgttgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTAC
EST: gi|298167651|gb|HO012914.1|HO012914
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccgttgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTAC
EST: gi|33389849|gb|CA853056.1|CA853056
EST:     ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAG                         GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTAC
genomic: ACACCTACATCTGTTTTGGGTCTTCCAATTGGGCAACACATAAGTTGCAGgttccgttgc ... tctcaaacagGGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTAC