1 5' 3' | 2 5' 3' | 3 5' 3' |
TACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGTACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaaaatcaaatgaaaaataaaaagtttctgtctttatttgcttcagctattttttttatacctgtatttgggattctttagtttgtgtgtagtatgtgaatgtgacctttggttttgttatggttgaaactatgcag
species | Glycine max |
transcript | GLYMA19G28220.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGGEST: gi|193595583|gb|FK552264.1|FK552264
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGGEST: gi|209724892|gb|BW669581.1|BW669581
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGGEST: gi|10846178|gb|BF069139.1|BF069139
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGGEST: gi|22523881|gb|BU082692.1|BU082692
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT TTATCTTCCCAAAATGTTTATCACGACGAGATAGACTTTGAGTTCTTGGGGEST: gi|19053501|gb|BM732168.1|BM732168
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGGEST: gi|151398130|gb|EV268008.1|EV268008
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
EST: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT TTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactatgcagTTATCTTCCCAAAATGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGTACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATgtatgcacaaaatcaaatgaaaaataaaaagtttctgtctttatttgcttcagctattttttttatacctgtatttgggattctttagtttgtgtgtagtatgtgaatgtgacctttggttttgttatggttgaaactatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG