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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcctattgttttctatattgttttctctacttcaggttacctcctgtttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcag

Basic information

species Glycine max
transcript GLYMA19G27250.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27250.3 (Glycine max), 5'ss of exon 2
lower sequence: AT5G14030.4 (Arabidopsis thaliana), 5'ss of exon 2
GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcctattgttttctatattgttttct----ctacttcaggttac-ctcctgtttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcag
| |||| |||||||| |   |  ||||  ||||||||   |   |  ||||||| ||  | | ||| | ||| ||||| ||||||||||| ||||||||||||||||| |  |   |  || | | || | |    || ||| || ||   |||  ||  ||  |||  |   ||   || ||                              
GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTTTGAAGTTGTTAATGGAAACACTTCAAAATCATGGGAAAGACTTGATGCgtgagtttcttcctcaatcataaaatcttatattggcctgctttagcttttactctcgtcactaatctaatat-ttgctgtgcag-----------------------------

upper sequence: GLYMA19G27250.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0068g01370.t01 (Vitis vinifera), 5'ss of exon 2
GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcctattgttttctatattgttttctctacttcaggttacctcctgtttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcag
||| || |||||||||||  |  | || ||||||||| |    ||||  ||| || |  ||||||| | ||| ||||  ||||||||||||||||||||||||||| |   ||||       || |   ||   |||| |  | |||   |||| |   | |   |   |||| ||  | | |   || ||||| ||   |  | |||
GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTTAATATTGTCAGTGGCAACACTTCAACATCATGGGAAAGGCTTGATGCgtgagttcctctttgta------atagcaatc---acttaacataaccatgtgttccaattttttagttgttta-tttttttgtaagtataaacatgtataacatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6913960|gb|AW395490.1|AW395490
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|15815757|gb|BI788032.1|BI788032
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|23064074|gb|BU578847.1|BU578847
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|13791278|gb|BG653869.1|BG653869
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT