Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcctattgttttctatattgttttctctacttcaggttacctcctgtttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcag

Basic information

species Glycine max
transcript GLYMA19G27250.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27250.3 (Glycine max), 5'ss of exon 2
lower sequence: AT5G14030.4 (Arabidopsis thaliana), 5'ss of exon 2
GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcctattgttttctatattgttttct----ctacttcaggttac-ctcctgtttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcag
| |||| |||||||| |   |  ||||  ||||||||   |   |  ||||||| ||  | | ||| | ||| ||||| ||||||||||| ||||||||||||||||| |  |   |  || | | || | |    || ||| || ||   |||  ||  ||  |||  |   ||   || ||                              
GTCGGCGTATGATGTGACTCTGACAGATAATAGCTGGGATAAAAAGACTTTTGAAGTTGTTAATGGAAACACTTCAAAATCATGGGAAAGACTTGATGCgtgagtttcttcctcaatcataaaatcttatattggcctgctttagcttttactctcgtcactaatctaatat-ttgctgtgcag-----------------------------

upper sequence: GLYMA19G27250.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0068g01370.t01 (Vitis vinifera), 5'ss of exon 2
GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcctattgttttctatattgttttctctacttcaggttacctcctgtttctgctctgctgcattttagttcatctctttttacaaacaagtgctattttcag
||| || |||||||||||  |  | || ||||||||| |    ||||  ||| || |  ||||||| | ||| ||||  ||||||||||||||||||||||||||| |   ||||       || |   ||   |||| |  | |||   |||| |   | |   |   |||| ||  | | |   || ||||| ||   |  | |||
GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTTAATATTGTCAGTGGCAACACTTCAACATCATGGGAAAGGCTTGATGCgtgagttcctctttgta------atagcaatc---acttaacataaccatgtgttccaattttttagttgttta-tttttttgtaagtataaacatgtataacatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21479709|gb|BQ576392.1|BQ576392
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192304252|gb|FG993536.1|FG993536
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|10843631|gb|BF066906.1|BF066906
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|42722935|gb|CK768834.1|CK768834
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|213619743|gb|DB967365.1|DB967365
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|12773643|gb|BG238570.1|BG238570
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|19346082|gb|BM890962.1|BM890962
EST:     TTTGATGTAATCA--GCTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|308099225|gb|HO761403.1|HO761403
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|18848454|gb|BM567677.1|BM567677
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192308235|gb|FK002747.1|FK002747
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|6913960|gb|AW395490.1|AW395490
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|22928890|gb|BU546029.1|BU546029
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|15815757|gb|BI788032.1|BI788032
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|254330168|gb|GR839721.1|GR839721
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|308097960|gb|HO761131.1|HO761131
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|7590568|gb|AW706317.1|AW706317
EST:     TCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|209727179|gb|BW660158.1|BW660158
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|57574048|gb|CX547023.1|CX547023
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|31469976|gb|CD412004.1|CD412004
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192320995|gb|FK012391.1|FK012391
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|23064074|gb|BU578847.1|BU578847
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|254330169|gb|GR839722.1|GR839722
EST:     TTTGATGT-ATCAGT-GTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|9259491|gb|BE347646.1|BE347646
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|37995509|gb|CF807098.1|CF807098
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|27425237|gb|CA936757.1|CA936757
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|13791278|gb|BG653869.1|BG653869
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|192308236|gb|FK002748.1|FK002748
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
EST: gi|7693381|gb|AW761474.1|AW761474
EST:     TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGC                         TGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT
genomic: TTTGATGTAATCAGTGGTAGCACATCAAAGTCATGGGAAAGGCTTGATGCgtgagtttcc ... ctattttcagTGGTGGCATCATTTCTCACACATTTGAGCTGGAGGCAAAATCAAAGGGAGT