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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGGAGgtttgtgttcatttaattttaaggcctaagtgcaccaaattttcattttaggaatgcactttttaggcgattagatgaatttgaagccaaagtgtatcttctagctggatggtgctcttgggttattttctgatatgtgagagatactttttttttttttctcgaatgaag

Basic information

species Glycine max
transcript GLYMA19G27200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27200.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0068g01430.t01 (Vitis vinifera), 5'ss of exon 2
GGATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGGAGgtttgtgttcatttaattttaa--ggcctaagtgcaccaaattttc--attttaggaatgcactttttaggcgattagatgaatt--tgaagccaaagtgtatcttctagctggatggtgctcttgggttattttctgatatgtgagagatactttttttttttttctcgaatgaag
| |||||||| || ||||||||||||||||| |||||||| |  || || | ||  |  |||| | ||  ||||  | ||    |     |||       |   || |  || |||| |  | |  | | |    |   ||| |  | ||  |   |||       | |      ||||  || ||  | |  ||    |     || |  || |||||| ||||| ||
GAATTGATGGTGTTGGACTTGGACTTATTTTGCATCATCAAAGGCTTGGAAAgtaagcattcactcaaacttaattgccccttattagttaaacccgtggagaatatgcttgtacttgtctgtctttgaaaaagctagatgatgagatagaattgtttcctatcataggccatgtttggtataattattaaattgcctaa----tttatgattgttttcttgaatggag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319091|gb|GR828819.1|GR828819
EST:     ATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGGAG                         GATTTTTGATATGTGGTGCTTGCATATTCCAGTCGCTGATCGGACACCGTT
genomic: ATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGGAGgtttgtgttc ... tcgaatgaagGATTTTTGATATGTGGTGCTTGCATATTCCAGTCGCTGATCGGACACCGTT
EST: gi|209709677|gb|BW657206.1|BW657206
EST:     ATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGGAG                         GATTTTTGATATGTGGTGCTTGCATATTCCAGTCGCTGATCGGACACCGTT
genomic: ATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGGAGgtttgtgttc ... tcgaatgaagGATTTTTGATATGTGGTGCTTGCATATTCCAGTCGCTGATCGGACACCGTT