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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAAATTCTGAAACAGTCCAGGTGCTATACTTGCTGTGAAACTAAGAAAAAGGTTGGGCTTTGGAATGTGGGAAAAACTGCACATTACAGGAATGCATgttgaagggaaggtatggcaatggaattttgattttatagtgacacatttgttgagtattaaattcttttttctattatttactcaatacaag

Basic information

species Glycine max
transcript GLYMA19G22500.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G22500.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G53590.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTCAAATTCTGAAACAGTCCAGGTGCTATACTTGCTGTGAAACTAAGAAAAAGGTTGGGCTTTGGAATGTGGGAAAAACTGCACATTACAGGAATGCATgttgaagggaaggtatggcaatggaattttgattttatagtgacacatttgttgagtattaaattcttttttctattatttactcaatacaag
            | |   |    |||| ||||||||||||||| |||| |||||| | || ||||| ||||||  |||  ||||  | ||||||||||| || ||||| |||||| ||||      | || || | || | |||   |||  |   | | |||  | |||||   || |   || || |    
------------AGATGATATGAGTGCAATACTTGCTGTGAAATTAAGGAAAAGGCTTGGTTTTGGGATGTGGACAAAGTTGCATTTGACAGGAATGCACGTGGAAGGAAAGgtagggcagccttttctttatctgattgggacctttttcatttttgt-aaacacatttttgcgttctactcttaaaag---

upper sequence: GLYMA19G22500.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G14590.1 (Arabidopsis thaliana), 5'ss of exon 4
TTTCAAATTCTGAAACAGTCCAGGTGCTATACTTGCTGTGAAACTAAGAAAAAGGTTGGGCTTTGGAATGTGGGAAAAACTGCACATTACAGGAATGCATgttgaagggaaggtatggcaatggaattt-tgattttatagtgacacatttg-ttgagtattaaattcttttttctattatttact----caatacaag
            | |   |    | || ||||| ||||||||  ||||||||||  | || ||||||||||||  |||  ||||  | |||||||||||||||||||| ||||||  ||| |    ||| ||    |  | | ||||  ||  || | |     ||  |  ||  |||   |  ||    | ||  |||
------------AGATGATATGAGCGCAATACTCGCTGTGAAGTTAAGAAAAAGACTTGGGTTTGGAATGTGGACAAAGTTGCATTTGACAGGAATGCATGTTGAAGGAAAGgtagtgcattttcttttctgcagcttcacttacacgcttccttcaatgaagtatcttacttcatatcggtatctttaactattgaag