Sequence
atgc intronic sequence ATGC exonic sequenceTCTGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGAGGTAACCAGgtaaaagagtgaattttcttctttttgacaatggcaatcttcttcatttgtagctacctttatttccttgttgaattgagatttatctgtggctctttgatttaag
Basic information
species | Glycine max |
transcript | GLYMA19G20750.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G20750.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G08680.2 (Arabidopsis thaliana), 5'ss of exon 3
-------------------------TCTGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGAGGTAACCAGgtaaaagagtgaattttcttctttttgacaatggcaatcttcttcatttgtagctacctttatttccttgttgaattgagatttatctgtggctctttgatttaag
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CCGCGAATTCACTCATCGTGTGAAATCTGTGTCAATGTCAAAGTTTACTTCTAAAGAAGTTGAAGTACTTCAAAATGGTGGTAATCAGgtagta------------ttgatgctaa-agtttcaattttctaaattt-tccttagatagatgtttccgtc----tgtagcttat--gagagttttctatttcag
upper sequence: GLYMA19G20750.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0056g00910.t01 (Vitis vinifera), 5'ss of exon 3
-------------------------TCTGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGAGGTAACCAGgtaaaagagtgaattttcttctttttgacaatggcaatcttcttcatttgtagctacctttatttccttgttgaattgagatttatctgtggctctttgatttaag
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TCGGGAGTTTACTCACCGTGTGAAGTCTGTCTCCATGGCAAAGTTCACTTCACAAGAAGTTGAAGCTCTTCAAAAAGGTGGCAATCAGgtagatatat---tgctgatttttctcaatttggcagcaagttttgcttattctcatgcttat---------gagatgtcatctcctttcag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193569510|gb|FK523125.1|FK523125EST: CTCTTCAAAATGGAGGTAACCAG AGTGCAAGGGAATTATATTTGAAAAATTGGGACTTCCAGAGACAGCGGCTG
genomic: CTCTTCAAAATGGAGGTAACCAGgtaaaagagt ... ttgatttaagAGTGCAAGGGAATTATATTTGAAAAATTGGGACTTCCAGAGACAGCGGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGAGGTAACCAGgtaaaagagtgaattttcttctttttgacaatggcaatcttcttcatttgtagctacctttatttccttgttgaattgagatttatctgtggctctttgatttaag
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG