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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTGAAGACTCGTGTCATAAAAAAAAACTGCAATCCTGACTGGAATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactgatgcaagctacatcaattttttttttcacatactaacaaaaaaaatgatagtcatcaaggcttaactgtattgatataggcttgaattga...

Basic information

species Glycine max
transcript GLYMA19G19260.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320476|gb|GR826925.1|GR826925
EST:     ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTG                         ACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
genomic: ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactg ... ttctgtgcagACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
EST: gi|151406416|gb|EV276231.1|EV276231
EST:     ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTG                         ACGGTTTATGACAAAGGCACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
genomic: ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactg ... ttctgtgcagACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
EST: gi|192329343|gb|FK022147.1|FK022147
EST:     ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTG                         ACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
genomic: ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactg ... ttctgtgcagACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
EST: gi|192325617|gb|FK019473.1|FK019473
EST:     ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTG                         ACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
genomic: ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactg ... ttctgtgcagACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
EST: gi|298195579|gb|HO043970.1|HO043970
EST:     ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTG                         ACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
genomic: ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactg ... ttctgtgcagACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
EST: gi|298174469|gb|HO014614.1|HO014614
EST:     ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTG                         ACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
genomic: ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactg ... ttctgtgcagACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
EST: gi|9899213|gb|BE608111.1|BE608111
EST:     ATGAAGAATTGCCCCTCTCTGTACAGGACATTAGAACCGCAATACATCTG                         ACGGTTTATGACACAGACACTTTCTCTGTGGATGACAGAATGGGTGAGGCA
genomic: ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactg ... ttctgtgcagACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
EST: gi|298164594|gb|HO014239.1|HO014239
EST:     ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTG                         ACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
genomic: ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactg ... ttctgtgcagACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
EST: gi|193311178|gb|FK274192.1|FK274192
EST:     AATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTG                         ACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
genomic: AATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactg ... ttctgtgcagACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
EST: gi|298185350|gb|HO030563.1|HO030563
EST:     ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTG                         ACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA
genomic: ATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactg ... ttctgtgcagACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCTGAAGACTCGTGTCATAAAAAAAAACTGCAATCCTGACTGGAATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGgtgagtactgatgcaagctacatcaattttttttttcacatactaacaaaaaaaatgatagtcatcaaggcttaactgtattgatataggcttgaattga

- - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
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