1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGAAGTGAGGATGTGGGTATATGAGGAGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATgtaaggactagccattcatttcatttccaatgagtttccaattttttttcagtgaatattaccactattataactgtaccaagaaagaaatgaacatcactatttcttttggcag
species | Glycine max |
transcript | GLYMA19G07410.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAAT GAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAEST: gi|42722611|gb|CK768510.1|CK768510
genomic: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATgtaaggacta ... cttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCA
EST: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAAT GAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAEST: gi|46492920|gb|CN472476.1|CN472476
genomic: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATgtaaggacta ... cttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCA
EST: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAAT GAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCAEST: gi|8284111|gb|BE021670.1|BE021670
genomic: AGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATgtaaggacta ... cttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCA
EST: GAAGCTCACAGATGTCATCAATCGAACCAAT GAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCA
genomic: GAAGCTCACAGATGTCATCAATCGAACCAATgtaaggacta ... cttttggcagGAAAATGTCAAATATCTCCCTGGAATCAAGCTTGGCAAAAATGTTGTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAAGTGAGGATGTGGGTATATGAGGAGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAATgtaaggactagccattcatttcatttccaatgagtttccaattttttttcagtgaatattaccactattataactgtaccaagaaagaaatgaacatcactatttcttttggcag
- - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG