1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATCTGTGCTTTGGCTATGGAAAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAGgtatttgaaatatatgtttttttaaaatcaaaggtagagtctatttcccatttgagtttttggggttctgtagtttttttctaatggctttgttcaattgtgtctgcag
species | Glycine max |
transcript | GLYMA19G06900.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAG GGACCAGATTTCGACCTCTTTCCTTCAATATTCCCAAACCGCTTTTCTCTTEST: gi|21887107|gb|BQ740320.1|BQ740320
genomic: AAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAGgtatttgaaa ... gtgtctgcagGGACCAGATTTCGACCTCTTTCCTTCAATATTCCCAAACCGCTTTTCCCTT
EST: AAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAG GGACCAGATTTCGACCTCTTTCCTTCAATATTCCCAAACCGCTTTTCCCTTEST: gi|9902817|gb|BE611785.1|BE611785
genomic: AAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAGgtatttgaaa ... gtgtctgcagGGACCAGATTTCGACCTCTTTCCTTCAATATTCCCAAACCGCTTTTCCCTT
EST: AAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAG GGACCAGATTTCGACCTCTTTGCTTCAATATTCCCAAACCGCTTTTCCCTTEST: gi|209723433|gb|BW651361.1|BW651361
genomic: AAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAGgtatttgaaa ... gtgtctgcagGGACCAGATTTCGACCTCTTTCCTTCAATATTCCCAAACCGCTTTTCCCTT
EST: AAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAG GGACCAGATTTCGACCTCTTTCCTTCAATATTCCCAAACCGCTTTTCCCTTEST: gi|16996820|gb|BM086192.1|BM086192
genomic: AAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAGgtatttgaaa ... gtgtctgcagGGACCAGATTTCGACCTCTTTCCTTCAATATTCCCAAACCGCTTTTCCCTT
EST: AAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAG GGACCAGATTTCGACCTCTTTCCTTCAATATTCCCAAACCGCTTTTCCCTT
genomic: AAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAGgtatttgaaa ... gtgtctgcagGGACCAGATTTCGACCTCTTTCCTTCAATATTCCCAAACCGCTTTTCCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGTGCTTTGGCTATGGAAAATTCAGAGAAGGTGGTCGCTGTGATCATGGTGGGTGGACCCACAAAAGgtatttgaaatatatgtttttttaaaatcaaaggtagagtctatttcccatttgagtttttggggttctgtagtttttttctaatggctttgttcaattgtgtctgcag
- - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA