Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCCCAAACATCCTAGTACGGGTTTGTTTGTTGGATTGAACAAGGGTCACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagttttatttagtttaatttaatttaaatgtggttctgattttattttttttagtttcatatttgtaatttttcgcgattataaatgttgttggaat...

Basic information

species Glycine max
transcript GLYMA19G06460.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208333966|gb|GE132429.1|GE132429
EST:     TGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: TGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|24206039|gb|BU965292.1|BU965292
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|193438465|gb|FK400930.1|FK400930
EST:     TGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: TGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|209697111|gb|BW680521.1|BW680521
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|14258658|gb|BG881566.1|BG881566
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|31464170|gb|CD406198.1|CD406198
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|4395665|gb|AI494662.1|AI494662
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|192325166|gb|FK017537.1|FK017537
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|193451505|gb|FK420613.1|FK420613
EST:     TGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: TGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|16348063|gb|BI973658.1|BI973658
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|209719271|gb|BW679813.1|BW679813
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|209714304|gb|BW665579.1|BW665579
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|6845917|gb|AW348207.1|AW348207
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|209719272|gb|BW679814.1|BW679814
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|209700121|gb|BW652979.1|BW652979
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|209714303|gb|BW665578.1|BW665578
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|209724502|gb|BW662984.1|BW662984
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|213610477|gb|DB978532.1|DB978532
EST:     ACGTTTTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|209700122|gb|BW652980.1|BW652980
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|254319333|gb|GR828953.1|GR828953
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|4306541|gb|AI443919.1|AI443919
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|31461747|gb|CD403775.1|CD403775
EST:     ACGTTGTCACCCAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|209697112|gb|BW680522.1|BW680522
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|8827557|gb|BE211287.1|BE211287
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTGAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|8826825|gb|BE210555.1|BE210555
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCATATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|207839162|gb|GD809579.1|GD809579
EST:     TGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: TGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|207757478|gb|GD729666.1|GD729666
EST:     GAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: GAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|209724501|gb|BW662983.1|BW662983
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|193341647|gb|FK305921.1|FK305921
EST:     TGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: TGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|19935087|gb|BQ080117.1|BQ080117
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|58023657|gb|CX710398.1|CX710398
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|151404856|gb|EV274670.1|EV274670
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGTGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|192312157|gb|FK005656.1|FK005656
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|31472277|gb|CD414305.1|CD414305
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|192312156|gb|FK005655.1|FK005655
EST:     CAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: CAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|213604861|gb|DB960556.1|DB960556
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|254320876|gb|GR827325.1|GR827325
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|208305308|gb|GE105319.1|GE105319
EST:     GAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: GAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|23730859|gb|BU763532.1|BU763532
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
EST: gi|7591495|gb|AW707227.1|AW707227
EST:     ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGG                         AAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC
genomic: ACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagtttta ... ctcaaaacagAAAACAAGCAAGCGAGTGCACTTTGTGAGGAACCTCATTCGAGAGGTTGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTCCCAAACATCCTAGTACGGGTTTGTTTGTTGGATTGAACAAGGGTCACGTTGTCACCAAGAAGGAGTTGCCTCCACGCCCTTCAGATCGTAAGGGGgtaagttttatttagtttaatttaatttaaatgtggttctgattttattttttttagtttcatatttgtaatttttcgcgattataaatgttgttggaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG