1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagtaatgccattgtttataacattatagaaataacatctcttaagaaatttcacttaggaaagtcttattatattgctagaacttgattattgccaacttataataaaatatatcttatgcaaattaattccaatttgttatttttcatttgtcatttgcttttgtatagcag
species | Glycine max |
transcript | GLYMA19G04320.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCAGCAAACCTGGCAAAGAGCTTGAG AGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAEST: gi|193537347|gb|FK495838.1|FK495838
genomic: GTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAA
EST: TCAGCAGACCTGGCAAAGAGCTTGAGCAGEST: gi|207806384|gb|GD777391.1|GD777391
genomic: TCAGCAAACCTGGCAAAGAGCTT--G-AGgtacgtagta ... tgtatagc
EST: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAG AGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAEST: gi|207744988|gb|GD716784.1|GD716784
genomic: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAA
EST: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAG AGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAEST: gi|193528213|gb|FK487747.1|FK487747
genomic: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAA
EST: CAGCAAACCTGGCAAAGAGCTTGAG AGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAEST: gi|193485974|gb|FK452161.1|FK452161
genomic: CAGCAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAA
EST: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAG AGCAGCTATCGTGAGTACTTGAAGCTGAAAGCAAGATEST: gi|208166942|gb|GD962004.1|GD962004
genomic: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGAT
EST: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGCAGEST: gi|208282760|gb|GE074670.1|GE074670
genomic: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTT--G-AGgtacgtagta ... tgtatagc
EST: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAG AGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAEST: gi|193508903|gb|FK465499.1|FK465499
genomic: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAA
EST: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAG AGCAGCTACCGTGAGTACTTGTAAGCTEST: gi|208171464|gb|GD971889.1|GD971889
genomic: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAGTACTTG-AAGCT
EST: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAG AGCAGCTACCGTGAGEST: gi|208197576|gb|GD999805.1|GD999805
genomic: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAG
EST: CAAACCTGGCAAAGAGCTTGAG AGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAEST: gi|208071166|gb|GD868441.1|GD868441
genomic: CAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAA
EST: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAG AGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAEST: gi|18733553|gb|BM527677.1|BM527677
genomic: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAA
EST: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAG AGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAEST: gi|193633969|gb|FK581091.1|FK581091
genomic: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAA
EST: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAG AGCAGCTACCGTGAGTACTTGTAAGCT
genomic: AGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagta ... tgtatagcagAGCAGCTACCGTGAGTACTTG-AAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGgtacgtagtaatgccattgtttataacattatagaaataacatctcttaagaaatttcacttaggaaagtcttattatattgctagaacttgattattgccaacttataataaaatatatcttatgcaaattaattccaatttgttatttttcatttgtcatttgcttttgtatagcag
- - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT