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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTATGATCCACTTGATCCATATGGAAATATCACAATCAAATGGGATATCATAAGTTGGACCCCTGATGGTTATGTTgtaagtactttcttttacagtttcacctattaatatctgaagcaaatcatctgatttacaattaaacatgatggtcgtaaatgtttttggctcttttttc...

Basic information

species Glycine max
transcript GLYMA19G04210.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G04210.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g30260.1 (Oryza sativa), 5'ss of exon 2
AAGCTTATGATCCACTTGATCCATATGGAAATATCACAATCAAATGGGATATCATAAGTTGGACCCCTGATGGTTATGTTgtaagtactttcttttacagtttcacctattaatatctgaagcaaatcatctgat-ttacaattaaacatgatggtcgtaa--atgtttttggctcttttttc--
|||| |||||||| || |||||| |||| |||||||||||||| ||||| |||| |   |||||||| ||||| |||||||||||| |  |     | | | ||| || | || ||  |  |    || |      || ||  |||| |   |   ||  |  |||| | ||   ||    |   
AAGCATATGATCCTCTCGATCCAAATGGGAATATCACAATCAAGTGGGACATCACACAGTGGACCCCAGATGGCTATGTTgtaagttcact-----agattgtcagctttcaacataagctggggctctttgagcctttcatctaaaaaaagttcacgagattatgtgtctgaaactaccattta

upper sequence: GLYMA19G04210.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G826714_T02 (Zea mays), 5'ss of exon 2
AAGCTTATGATCCACTTGATCCATATGGAAATATCACAATCAAATGGGATATCATAAGTTGGACCCCTGATGGTTATGTTgtaagta-----ctttcttttacagtttcacctattaatatctgaagcaaatcatctgatttacaattaaacatgatggtcgtaaatgtttttggctcttttttc
| ||||||||| | || |||||| |||| || ||||| || ||||||||||||||    ||||| |||||||| ||||| |||||||     |   |    |||| |  |  ||||   ||||  |||  | ||     |   | |||  |     | |||  |   |   |   |  | |    
AGGCTTATGATTCGCTGGATCCAAATGGCAACATCACCATAAAATGGGATATCATGCAGTGGACTCCTGATGGATATGTCgtaagtagaatgcccaccccaacagctgtatatattt-catctccagcctagcaggccctggtctattctattgagtagtc-cagtcgacctgtacaatata---

upper sequence: GLYMA19G04210.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G60920.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGCTTATGATCCACTTGATCCATATGGAAATATCACAATCAAATGGGATATCATAAGTTGGACCCCTGATGGTTATGTTgtaagtactttcttttacagtttcacctattaatatctgaagcaaatcatctgatttacaattaaacatgatggtcgtaaatgtttttggctcttttttc
|||| |||||| | ||||||||| | || || || ||||| ||||||||| | || || ||||| |||||||| |||||||||||| |       |  |||   |  |||||     ||          | |||||  ||  |||||    || | ||    | | | |           
AAGCATATGATGCGCTTGATCCAGAAGGCAACATTACAATGAAATGGGATGTTATGAGCTGGACTCCTGATGGCTATGTTgtaagttcaagaacctgaagtagaaaatattaggccttgtttaccggtttttgatt--catctaaactgtttgtttgtt--cgatctag-----------

upper sequence: GLYMA19G04210.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGCTTATGATCCACTTGATCCATATGGAAATATCACAATCAAATGGGATATCATAAGTTGGACCCCTGATGGTTATGTTgtaagtacttt----------cttttacagtttcacctattaatatctgaagcaaatcatctgatttacaat-taaacatgatggtcgtaaatgtttttggctcttt--tttc--
||||||||||| ||||||||||||||||||| || || || ||||||||||| || || |||||   |||||||||||| ||||| | |||          |||| |  |||     ||| |  || | |   ||   ||||  |||  ||| |     |  || |    | | ||      |  ||   |||  
AAGCTTATGATGCACTTGATCCATATGGAAACATTACTATAAAATGGGATATTATGAGCTGGACTGGTGATGGTTATGTGgtaagaaatttaaaaacttcactttaaatgttgtggttatcacaatgttatataataaatcttgtttcaaatgtgtctttagtgattactactattaacaaattattggcttcag

upper sequence: GLYMA19G04210.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g05070.t01 (Vitis vinifera), 5'ss of exon 2
AAGCTTATGATCCACTTGATCCATATGGAAATATCACAATCAAATGGGATATCATAAGTTGGACCCCTGATGGTTATGTTgtaagtactttcttttacagtttcacctattaatatctgaagcaaatc--atctgatttacaattaaacatgatggtcgtaaatgtttttggctcttttttc----------------------------------------------
|||| || ||| | ||||||||| | ||||||||||| ||||| |||||| | || || ||||| || |||||||||||||||||||   | ||  ||      |  | || ||  |   ||  || |   |   |    | | |   | |  ||  | | ||||  ||   ||    ||||                                              
AAGCCTACGATTCGCTTGATCCAGAGGGAAATATCACCATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGTTATGTTgtaagtaaaatattaaactacaaaatattttgattgcaatagtgaaccttgttcaagcatccacttgcctt--tgcccatgaatggattccacttacatttcaattgttttctagttatgatctaatctttttattcatgttgggcag

upper sequence: GLYMA19G04210.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0083g01160.t01 (Vitis vinifera), 5'ss of exon 2
AAGCTTATGATCCACTTGATCCATATGGAAATATCACAATCAAATGGGATATCATAAGTTGGACCCCTGATGGTTATGTTgtaagtactttctt-ttacagtttcacctattaatatctgaagcaaatcatctgatttacaattaaacatgatggtcgtaaatgtttttggctcttttttc-
|||| |||||| |||| |||||  ||||||||||||| |||||||||||||| || || ||||| || ||||| ||||||||||||||||  |  ||| |   |  |  | |||||  | |      ||  || |  ||  | | | | ||  | || |   ||| | ||     |||    
AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATATTATGAGCTGGACTCCAGATGGCTATGTTgtaagtacttgttcattatatacttcctaactaata--taacaggggtcgactcagataatagtgatcttgtagttcatgcttgtgtatgttaagtttaggt