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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTTGGGAAAGGTGATTCTGTTGTTTACAGTCAGTTGTATCCCTTCGAAGGCCTATGGAATTACACCTCTGGCATCATTCACCATGTGAAACTCAAAGgtatgatgagttacttcttttctttggaattctgttcaaatgaagggtagtgttggtttggtgctgagtaggaagcagtgattaccgacaaggaacatgc...

Basic information

species Glycine max
transcript GLYMA19G03220.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G03220.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0051g00640.t01 (Vitis vinifera), 5'ss of exon 2
AGTGTTGGGAAAGGTGATTCTGTTGTTTACAGTCAGTTGTATCCCTTCGAAGGCCTATGGAATTACACCTCTGGCATCATTCACCATGTGAAACTCAAAGgtatgat-------gagttacttcttttctttggaattctgttcaa--atgaagggtagtgttggtttggtgctgagtaggaagcagtgattaccgacaaggaacatgc
|||||   |   ||   |||   |||||| || |||||||| || ||||| ||||| | ||| ||||| ||||||||||||||||||||||  ||  | ||||  |         |  |  |  |  ||| |||| || | || |   ||  |      | ||||| || || | | || || | | || ||   | | |         
AGTGTAAAGTCGGGGTTTTCAACTGTTTATAGCCAGTTGTACCCATTCGAGGGCCTCTTGAACTACACTTCTGGCATCATTCACCATGTGAGGCTTGATGgtacaaattaacagaaacttgtagtaatctgtggatttttatttatttatttatttctttattggtgtg-tgattattatgatg-aatgtttcttgcctata-------