Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254316243|gb|GR827780.1|GR827780EST: GTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAG GTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
genomic: GTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAGgtattttttt ... tatgctgaagGTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
EST:
gi|254329673|gb|GR839226.1|GR839226EST: TCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAG GTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
genomic: TCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAGgtattttttt ... tatgctgaagGTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
EST:
gi|193454775|gb|FK417394.1|FK417394EST: TCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAG GTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
genomic: TCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAGgtattttttt ... tatgctgaagGTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
EST:
gi|208178908|gb|GD979659.1|GD979659EST: TCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAG GTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
genomic: TCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAGgtattttttt ... tatgctgaagGTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
EST:
gi|18040013|gb|BM308307.1|BM308307EST: TCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAG GTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
genomic: TCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAGgtattttttt ... tatgctgaagGTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
EST:
gi|207826461|gb|GD800720.1|GD800720EST: AAAGACTATTCAGTTGATGTCTAAG GTTGAGAATACAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGAC
genomic: AAAGACTATTCAGTTGATGTCTAAGgtattttttt ... tatgctgaagGTTGAGAAT-CAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGAC
EST:
gi|7685758|gb|AW756406.1|AW756406EST: TCCGCAAAGTTATGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAG GTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
genomic: TCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAGgtattttttt ... tatgctgaagGTTGAGAATCAGGAAGGAGTCCTGAATTTTGACGAAATCCTGCGCGAGACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACATGATTGCTCTTTCATTTGTTCGCAAAGGCTCAGATCTTGTTAATGTCCGCAAGGTTCTGGGGCCACATGCAAAGACTATTCAGTTGATGTCTAAGgtatttttttgttgaacttccttaataactagagtttttattattcatgcggtttctcagttgctctggcaatggctgtgttttttttttttataatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG