1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTGGAGGGTTCAACAATGGTTGTTCCATCTGGTTCTGTATTTTTGGTGAAACCAATCTCTTTCTCAGGCCCTAATTGTGAGCCAAACATTGTTTTTCAGgtgaaggaattagtccatctcttcccacattttcctctcctatatgtcaccctacaaacactagagcatatataggccaatggcccctttttgacttaat...
species | Glycine max |
transcript | GLYMA19G00230.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACCAATCTCTTTCTCAGGCCCTAATTGTGAGCCAAACATTGTTTTTCAG TTGGATGGCAAAATCATTGCACCTACAAGCTCTGAAGCTTGGGGCTCTGGTEST: gi|192324799|gb|FK016540.1|FK016540
genomic: AACCAATCTCTTTCTCAGGCCCTAATTGTGAGCCAAACATTGTTTTTCAGgtgaaggaat ... atacatgcagTTGGATGGCAAAATCATTGCACCTACAAGCTCTGAAGCTTGGGGCTCTGGT
EST: AACCAATCTCTTTCTCAGGCCCTAATTGTGAGCCAAACATTGTTTTTCAG TTGGATGGCAAAATCATTGCACCTACAAGCTCTGAAGCTTGGGGCTCTGGTEST: gi|192333544|gb|FK025739.1|FK025739
genomic: AACCAATCTCTTTCTCAGGCCCTAATTGTGAGCCAAACATTGTTTTTCAGgtgaaggaat ... atacatgcagTTGGATGGCAAAATCATTGCACCTACAAGCTCTGAAGCTTGGGGCTCTGGT
EST: AACCAATCTCTTTCTCAGGCCCTAATTGTGAGCCAAACATTGTTTTTCAG TTGGATGGCAAAATCATTGCACCTACAAGCTCTGAAGCTTGGGGCTCTGGT
genomic: AACCAATCTCTTTCTCAGGCCCTAATTGTGAGCCAAACATTGTTTTTCAGgtgaaggaat ... atacatgcagTTGGATGGCAAAATCATTGCACCTACAAGCTCTGAAGCTTGGGGCTCTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGAGGGTTCAACAATGGTTGTTCCATCTGGTTCTGTATTTTTGGTGAAACCAATCTCTTTCTCAGGCCCTAATTGTGAGCCAAACATTGTTTTTCAGgtgaaggaattagtccatctcttcccacattttcctctcctatatgtcaccctacaaacactagagcatatataggccaatggcccctttttgacttaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccttt