Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctgctctatctctctctttgtttttttttttttttgttgcgttggtaaattgatctgtttatgtgctgctatgtattttattttttttattttctgggatcaaagtctaataatatacgaacactgcatgagcagg

Basic information

species Glycine max
transcript GLYMA18G52210.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519318|gb|BM188360.1|BM188360
EST:     AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG                         TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: gi|192328861|gb|FK023263.1|FK023263
EST:     AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG                         TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: gi|31473009|gb|CD415037.1|CD415037
EST:     AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG                         TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: gi|298192082|gb|HO036164.1|HO036164
EST:     AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAGGCTCGTCAGG                         TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: gi|23728045|gb|BU762064.1|BU762064
EST:     AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG                         TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: gi|33388742|gb|CA851949.1|CA851949
EST:     AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG                         TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: gi|298175521|gb|HO018232.1|HO018232
EST:     AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG                         TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: gi|26047967|gb|CA784599.1|CA784599
EST:     TTCGACTCACCATGAAGCTCGTCAGG                         TTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
genomic: TTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC
EST: gi|298174943|gb|HO014860.1|HO014860
EST:     AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGGAGCTCGTCAGG                         TTTTTAATGAAGCTGAACAATGAGACCGTGTCAATTGAGCTCAAGAATGGC
genomic: AGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctg ... catgagcaggTTTTTAATGAAGTTGAACAATGAAACCGTGTCAATTGAGCTCAAGAATGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGGtttttctctgctctatctctctctttgtttttttttttttttgttgcgttggtaaattgatctgtttatgtgctgctatgtattttattttttttattttctgggatcaaagtctaataatatacgaacactgcatgagcagg

- - - - - - - - - - - - - - - - - - - - - -  TGAAGC