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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCTTCAGGCAATTACTGCATACACTTTGCGGCTGAAAAGTCTAATCTCCAGAGAAATAGAGAAAATTGATGTTAGAGCCGATGCAGAGACCTTGAGgtatcatttatacatggtttttgtttttcatattctgttggtgctctcattgatgcctctgtgaccataatatttgaattttggaccttctgtcattaat...

Basic information

species Glycine max
transcript GLYMA18G50960.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G50960.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G38880.1 (Arabidopsis thaliana), 5'ss of exon 2
AATTGCTTCAGGCAATTACTGCATACACTTTGCGGCTGAAAAGTCTAATCTCCAGAGAAATAGAGAAAATTGATGTTAGAGCCGATGCAGAGACCTTGAGgtatcatttatacatggtttttgtttttcatattctgttggtgctctcattgatgcctctgtgaccataatatttgaattttggaccttc--tgtcattaat--
   |||||||||| ||| ||||||||||||| ||  | || | ||| || |||||||| || ||||| |||||||| ||||| ||||| || |  || |||| |    |     |  || || |    |   || |  | |||| |||  |||| |  | | |        |    ||   || |||||   ||  |||  |  
TGCTGCTTCAGGCTATTGCTGCATACACTTTACGCATTAAGACTCTGATATCCAGAGAGATGGAGAAGATTGATGTCAGAGCAGATGCTGAAATGTTAAGgtgtgtcctgactttccttcttatgccactctttgttattgtgcactc-ctgattctgcagggtatggttcacccaaa---tgcaccttgcatgctatttttgc

upper sequence: GLYMA18G50960.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0083g00990.t01 (Vitis vinifera), 5'ss of exon 2
AATTGCTTCAGGCAATTACTGCATACACTTTGCGGCTGAAAAGTCTAATCTCCAGAGAAATAGAGAAAATTGATGTTAGAGCCGATGCAGAGACCTTGAGgtatcatttatacatggtttttgtttttcatattctgttggtgctctcattgatgcctctgtgaccataatatttgaattttggaccttctgtcattaat-
| || ||||||||||||||||||||||||||  ||||||||| ||||||  | ||||||||||||||||||||||||||||| ||||||||  |||||||||| | ||||||  |  || ||   ||| ||    ||||| |   ||  |     |   | | ||  |    | |   | |   |    | |   || || 
AGTTACTTCAGGCAATTACTGCATACACTTTAAGGCTGAAAACTCTAATTACAAGAGAAATAGAGAAAATTGATGTTAGAGCTGATGCAGAAGCCTTGAGgta-cttttatattttcttcttagctttgatgccttgttgttttgcttttccccccacttttaacactttgctcttgctctactagtagcagcagttgata