Sequence
atgc intronic sequence ATGC exonic sequenceGATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGCTGGACCCCTGATGGATATGTggtaagtatagtttttttgacaatatcaccttttaatttgaaaagcaaaccatctgttgtgcattatgcatggtgttgttttgctccttttctttccgtt...
Basic information
species | Glycine max |
transcript | GLYMA18G50760.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G50760.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g30260.1 (Oryza sativa), 5'ss of exon 2
GATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGCTGGACCCCTGATGGATATGTggtaagtatagtttttttgacaatatcaccttttaatttgaaaagcaaaccatctgttgtgcattatgcatg-gtgttgttttgctccttttctttccgtt--
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-AAGCATATGATCCTCTCGATCCAAATGGGAATATCACAATCAAGTGGGACATCACACAGTGGACCCCAGATGGCTATGTTgtaagttca-ctagattgtcagcttt-caacataagctggggctctttgagcctttcatctaaaaaaagttcacgagattatgtgtctgaaactaccattta
upper sequence: GLYMA18G50760.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g54750.1 (Oryza sativa), 5'ss of exon 2
GATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGCTGGACCCCTGATGGATATGTggtaagtatagtttttttgacaatatcaccttttaatttgaaaagcaaaccatctgttgtgc-attatgcatggtgttgttttgc--tccttttctttccgtt-
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-AAGCTTATGATTCGCTGGATCCAAATGGGAACATCACAATAAAATGGGACGTTATGCAATGGACTCCTGATGGTTACGTTgtaagta--gcacatccatcattcgtatctttcatctcaacctattattgagcgataattttattttata-gaaattgtcttgcaatgcaaaactaatagtat
upper sequence: GLYMA18G50760.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g41310.1 (Oryza sativa), 5'ss of exon 2
GATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGCTGGACCCCTGATGGATATGTggtaagtatagtttttttgacaatatcaccttt-----taatttgaaaagcaaaccatctgttgtgca---ttatgcatggtgttgttttgctccttttctttccgtt
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-AGGCATACGATCCGCTTGATCCAAATGGGAACATAACAATCAAGTGGGATGTGCTGCAATGGACTCCAGATGGATATGTTgtgagtaaaccttaatttactattatgtgtctgtaactactttattaccattatcatctatcaaccaactcaatgcatgtcgctgtt--gccacatgagtcc-----
upper sequence: GLYMA18G50760.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G826714_T02 (Zea mays), 5'ss of exon 2
GATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGCTGGACCCCTGATGGATATGTggtaagtatagtttttttgacaatatcaccttttaatttga---aaagcaaaccatctgttgtgcattatgcatggtgttgttttgctccttttctttccgtt
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-AGGCTTATGATTCGCTGGATCCAAATGGCAACATCACCATAAAATGGGATATCATGCAGTGGACTCCTGATGGATATGTCgtaagtagaatgcccaccccaacagctgtatatatttcatctccagcctagcaggccctggtctattctattgagtagtccagtcgacctgtacaatata--
upper sequence: GLYMA18G50760.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G29810.1 (Arabidopsis thaliana), 5'ss of exon 2
GATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGCTGGACCCCTGATGGATATGTggtaagtat------agtttttttgacaatatcaccttttaatttgaaaagcaaaccatctgttgtgcattatgcatggtgttgtt--ttgctcctttt--ctttccgtt--------
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-AAGCTTATGATGCACTTGATCCATATGGAAACATTACTATAAAATGGGATATTATGAGCTGGACTGGTGATGGTTATGTGgtaagaaatttaaaaacttcactttaaatgttgtggtt--atcacaatgttatataataaatcttgtttcaaatgtgtctttagtgattactactattaacaaattattggcttcag
upper sequence: GLYMA18G50760.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0083g01160.t01 (Vitis vinifera), 5'ss of exon 2
GATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGCTGGACCCCTGATGGATATGTggtaagtatagtttttttgacaatatcaccttttaatttgaaaagcaaaccatctgttgtgcattatgcatggtgttgttt-tgctccttttctttccgtt-----
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-AAGCCTATGATGCACTGGATCCCAATGGAAATATCACGATCAAATGGGATATTATGAGCTGGACTCCAGATGGCTATGTTgtaagtac----ttgttcattatat-acttcctaactaatataacaggggtcgactcagataatagtgatcttgtagttcatgcttgtgtatgttaagtttaggtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298182947|gb|HO028160.1|HO028160EST: CTGATGGATATGT GGCTGTTGTTACGATGAACAACTTCCAACAATATCGTCATATCGCTTCACC
genomic: CTGATGGATATGTggtaagtata ... tgaatgtacaGGCTGTTGTTACGATGAACAACTTCCAACAATATCGTCATATCGCTTCACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGCTTATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGCTGGACCCCTGATGGATATGTggtaagtatagtttttttgacaatatcaccttttaatttgaaaagcaaaccatctgttgtgcattatgcatggtgttgttttgctccttttctttccgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagcaa