Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGCGGTCCTTGCAAATTCATAGAGCCAGCGATTCACGCCATGGCCGACAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGtgattttcgcatcctaattcttcttaattgactccaatttttgtttccgcgaatgattctgaactttttttattctgttttggattattttttttgggaatagg

Basic information

species Glycine max
transcript GLYMA18G49040.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5057919|gb|AI736395.1|AI736395
EST:     CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTG                         ATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
genomic: CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGtgattttcgc ... tgggaataggATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
EST: gi|19937420|gb|BQ081284.1|BQ081284
EST:     CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTG                         ATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
genomic: CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGtgattttcgc ... tgggaataggATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
EST: gi|7684955|gb|AW755603.1|AW755603
EST:     CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTG                         ATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
genomic: CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGtgattttcgc ... tgggaataggATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
EST: gi|5761106|gb|AI966469.1|AI966469
EST:     CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTG                         ATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
genomic: CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGtgattttcgc ... tgggaataggATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
EST: gi|4291394|gb|AI437613.1|AI437613
EST:     CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTG                         ATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTNTCGTGTTGTGGA
genomic: CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGtgattttcgc ... tgggaataggATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
EST: gi|8283327|gb|BE020888.1|BE020888
EST:     CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTG                         ATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
genomic: CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGtgattttcgc ... tgggaataggATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
EST: gi|192333447|gb|FK023976.1|FK023976
EST:     CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTG                         ATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
genomic: CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGtgattttcgc ... tgggaataggATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
EST: gi|17519888|gb|BM188930.1|BM188930
EST:     CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTG                         ATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
genomic: CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGtgattttcgc ... tgggaataggATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
EST: gi|7684952|gb|AW755600.1|AW755600
EST:     CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTG                         ATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
genomic: CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGtgattttcgc ... tgggaataggATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
EST: gi|8669107|gb|BE190214.1|BE190214
EST:     CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTG                         ATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA
genomic: CAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGtgattttcgc ... tgggaataggATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGA