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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCACCTGAAGAGTCCACTGCACCTTACCATTCCATCACCTTACCTGAGACTTTTGATCTTGATGATTTTGAACTACCAGATAATGACATTCTTCAAGGgttagttcctaaatacttgattatatgatcattcatagctttagctattgcttacttcagtgaggacatttttactcaagttggtttttatctaatttaa...

Basic information

species Glycine max
transcript GLYMA18G48020.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G48020.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G093119_T01 (Zea mays), 5'ss of exon 3
---TGCCACCTGAAGAGTCCACTGCACCTTACCATTCCATCACCTTACCTGAGACTTTTGATCTTGATGATTTTGAACTACCAGATAATGACATTCTTCAAGGgttagttcctaaatacttgattatatgatcattcatagctttagctattgcttacttcagtgaggacatttttactcaagttg-gtttttatctaatttaa
   | || ||||||||||| ||||| || || || || || ||  | |||||||| || |||||||||||||||||||| |||||   ||      ||||||||| |   |  |  | ||   |   |  |   ||||    || ||  | |||||  |||| |     | ||| |   ||  ||  | | ||||| |      
ATCTTCCTCCTGAAGAGTCAACTGCTCCGTATCACTCTATAACTCTGCCTGAGACATTCGATCTTGATGATTTTGAACTGCCAGAAGCTG---CGTTTCAAGGgtaaagccgcagcttct--gtcgaagaa--gttcactatttaag--aatgctttattcaatt----cttttctgaacactttccgctattatccag-----

upper sequence: GLYMA18G48020.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G421829_T01 (Zea mays), 5'ss of exon 3
---TGCCACCTGAAGAGTCCACTGCACCTTACCATTCCATCACCTTACCTGAGACTTTTGATCTTGATGATTTTGAACTACCAGATAATGACATTCTTCAAGGgttagttcctaaatacttgattatatgatcattcatagctttagctattgcttacttcagtgaggacatttttactcaagttggtttttatctaatttaa
   | || ||||| ||||| ||||| || || || || || ||  | |||||||| || |||||||||||||||||||| |||||   ||   |  ||||||||| |      |    ||   | ||| | ||| |  |   |   |||  || | | ||   |  | ||| ||||          | ||| ||| |      
ATCTACCTCCTGAGGAGTCAACTGCTCCATATCACTCTATAACTCTGCCTGAGACATTCGATCTTGATGATTTTGAACTGCCAGAAGCTG---TGTTTCAAGGgtaaagctgcagcctctgtttaataagttcactatttagtaatgct-ctgttcagttttttctgaacacttttt---------gctttgatccag-----

upper sequence: GLYMA18G48020.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0220g00080.t01 (Vitis vinifera), 5'ss of exon 2
TGCCACCTGAAGAGTCCACTGCACCTTACCATTCCATCACCTTACCTGAGACTTTTGATCTTGATGATTTTGAACTACCAGATAATGACATTCTTCAAGGgttagttcctaaa--tacttgattatatgatcattcatagctttagctattgcttacttcagtgaggacatttttactcaagttggtttttatctaatttaa
| || || ||||| || || ||||| || || ||||||||||| || ||||| |||||||||||||| ||||| || ||||||||||| ||| ||||||||| |||||| ||   || |   || |||  | |   | || || ||   | |  | |  || |       | | |    || || |     ||      || 
TACCTCCAGAAGAATCTACAGCACCATATCACTCCATCACCTTGCCAGAGACATTTGATCTTGATGACTTTGAGCTGCCAGATAATGATATTTTTCAAGGgtcagttccaaacattattcatttgtattttaagctaaagattaagtc-tggtatgcaccattttttttttgtatctataatttagaaaacattgttgata-