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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTCTTATGTTGCTTTACCTGCCCATCAGGAGATATGTGCTTCAAAAGGATTTGTCTTCTCGTAGATTATATGTTACACGCACCGAAGTAGTTTACAAggtatatatgagttgttctacatgatcatgatgttgtgatatatgagttttgatatgggaagtgatcttttattccctttctcccttggtcta

Basic information

species Glycine max
transcript GLYMA18G46310.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46310.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g03720.t01 (Vitis vinifera), 5'ss of exon 2
GCCTTCTTATGTTGCTTTACCTGCCCATCAGGAGATATGTGCTTCAAAAGGATTTGTCTTCTCGTAGATTATATGTTACACGCACCGAAGTAGTTTACAAggtatatatgagttgttctacatgatcatgatgttgtga-tatatgagttttgatatgggaagtgatctttt--attccctttctcccttggtcta-----
   |  |||||||||| ||||| ||| ||| ||||||||||||||| || ||| | || ||||||| |||| |||||||||  ||  || |||| |||||||| |  |||| |  || || || || || || || | | | | |   || |  ||       | || |||   | |   ||  || ||  |  ||     
-AATCATTATGTTGCTGTACCTTCCCTTCAAGAGATATGTGCTTCAGAAAGATATTTCATCTCGTAAATTACATGTTACACCTACTCAAATAGTCTACAAGgtttgcatgattatttttaaataattatcatcttctcagtttttcctttcttctacattgtcttatttttgtaactgtgttgttctctatgagtagttca