1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTGAGATAGTAAAGTTGCAAACTTTGAAGgtggggattgcgagttacgattctgggtcaacttaaagggggtgttgatttgattgggtggttgggattttatgatttgatttgatgggttggttgttat...
species | Glycine max |
transcript | GLYMA18G46140.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTTGAGATAGTAAAGTTGCAAACTTTGAAG CAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGTEST: gi|11412081|gb|BF424092.1|BF424092
genomic: GCTTGAGATAGTAAAGTTGCAAACTTTGAAGgtggggattg ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
EST: CTTGAGATAGTAAAGTTGCAAACTTTGAAG CAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGTEST: gi|298169267|gb|HO020627.1|HO020627
genomic: CTTGAGATAGTAAAGTTGCAAACTTTGAAGgtggggattg ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
EST: GCTTGAGATAGTAAAGTTGCAAACTTTGAAG CAATTATTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
genomic: GCTTGAGATAGTAAAGTTGCAAACTTTGAAGgtggggattg ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGAGATAGTAAAGTTGCAAACTTTGAAGgtggggattgcgagttacgattctgggtcaacttaaagggggtgttgatttgattgggtggttgggattttatgatttgatttgatgggttggttgttat
- - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggttgg