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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATGGAAAAAGCTAGGTGATCCTGTGATGCATATTGAGCTTCTTAGATGGGCTGAAATAATGGTCATTGCTCCATTGTCAGCAAATACTCTTGGCAAGgtaacaaactgatcagacttggctggttttgtctctttctatctacattgtcatgtgataaaatcataaaaacactactatgcattaaacaagctggctt...

Basic information

species Glycine max
transcript GLYMA18G45650.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G45650.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G407396_T02 (Zea mays), 5'ss of exon 2
TACATGGAAAAAGCTAGGTGATCCTGTGATGCATATTGAGCTTCTTAGATGGGCTGAAATAATGGTCATTGCTCCATTGTCAGCAAATACTCTTGGCAAGgtaacaaactgatcagacttggctggttttgtctctttctatctacattgtcatgtgataaaatcataaaaacactactatgcattaaacaagctggctt
||| ||||| ||| |||| |||   ||  | || || ||||| |  | |||||| ||  | ||||| ||||||||||||||||||||||| || |  ||||||    |   ||     ||  ||   |   |  |    ||  | ||||||  |   | | | | ||   |  | |  | ||| | |             
TACCTGGAAGAAGATAGGAGATGAAGTCTTACACATCGAGCTGCGGAAATGGGCAGACGTTATGGTGATTGCTCCATTGTCAGCAAATACCCTGGCTAAGgtat---atatattttttttctcttcgtggatagcgaattagtttcattgtattac-acagagtgatgctag-attgttctgc-tcag------------

upper sequence: GLYMA18G45650.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g10050.t01 (Vitis vinifera), 5'ss of exon 3
TACATGGAAAAAGCTAGGTGATCCTGTGATGCATATTGAGCTTCTTAGATGGGCTGAAATAATGGTCATTGCTCCATTGTCAGCAAATACTCTTGGCAAGgtaacaaactgatcagacttggctggttttgtctctttctatctacattgtcatgtgataaaatcataaaaacactacta----tgcatta-aacaagctggctt--
 |  |||| |||  |||| ||   |||| | || |||||||| | ||| ||||||||  | ||||| || || ||||| ||||||||||| ||||||||||||| |          |||| |  |   || || ||     |  |  ||    |   | | ||| | ||||| |    ||    |||||   ||  ||     |   
CAGTTGGACAAAATTAGGAGACAGTGTGCTTCACATTGAGCTCCGTAGGTGGGCTGATGTCATGGTAATCGCCCCATTATCAGCAAATACACTTGGCAAGgtaata-------tgaactttgaagaaattatccctcagatttcagcttcctttaacacacaattagaaaaatatggttaagagtgcatggtaatgagaacaatcgt