1 5' 3' | 2 5' 3' | 3 5' 3' |
ATGTAATAGACACCATAAAGTCTAAAGTGGAGAGCTTATGCCCTGGTGTTGTTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGCtgtaagtatatgtatatatttcagctaggttaaatggtgaaattattttaatttaactagtgattctgagtttcagttttatatatgcaattaggttaaatattacatgtttgatctataacttaaaaacatatatacgagttaggcacttatattgaacaaatttaattttca
species | Glycine max |
transcript | GLYMA18G44310.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGC TCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCGACCACEST: gi|308098002|gb|HO761173.1|HO761173
genomic: GCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGCtgtaagtata ... ttaattttcaGCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCAACCAC
EST: GTTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGC TCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCAACCACEST: gi|15000427|gb|BI321241.1|BI321241
genomic: GTTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGCtgtaagtata ... ttaattttcaGCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCAACCAC
EST: GTTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGC TCTTGGTGGACCTACTTGGACTGTGTAATTGGGTAGAAGAGACTCAACCAC
genomic: GTTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGCtgtaagtata ... ttaattttcaGCTTGGTGGACCTACTTGGACTGTGCAATTGGGTAGAAGAGACTCAACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTAATAGACACCATAAAGTCTAAAGTGGAGAGCTTATGCCCTGGTGTTGTTTCTTGTGCTGATATCCTTGCTGTAGCAGCAAGAGACTCGGTTGTAGCtgtaagtatatgtatatatttcagctaggttaaatggtgaaattattttaatttaactagtgattctgagtttcagttttatatatgcaattaggttaaatattacatgtttgatctataacttaaaaacatatatacgagttaggcacttatattgaacaaatttaattttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA