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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacctcgatgaacttgttgcaccctttctttttttatctttggatatatcatttgttatacaacatgctttttgtttctgggttgattgctgattctttttctatttctcttcggcgattgtcccttcaaatgttgaaga

Basic information

species Glycine max
transcript GLYMA18G43000.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120534630|gb|EH262763.1|EH262763
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|6134179|gb|AW132572.1|AW132572
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|213602154|gb|DB962647.1|DB962647
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCC
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCC
EST: gi|26047871|gb|CA784524.1|CA784524
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|193683072|gb|FK621006.1|FK621006
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|151398007|gb|EV267885.1|EV267885
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|120495967|gb|EH224134.1|EH224134
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|193568402|gb|FK522597.1|FK522597
EST:     ACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: ACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|9205154|gb|BE331378.1|BE331378
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|213601451|gb|DB968739.1|DB968739
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|20449496|gb|BQ253620.1|BQ253620
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|193682922|gb|FK625070.1|FK625070
EST:     CTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: CTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|213620225|gb|DB965461.1|DB965461
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAG
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAG
EST: gi|213618087|gb|DB963720.1|DB963720
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|120495266|gb|EH223433.1|EH223433
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG
EST: gi|209705809|gb|BW661477.1|BW661477
EST:     GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAA                         CAAGTTGCCTTTTACACTGGTCCCACAGT
genomic: GCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacct ... atgttgaagaCAAGTTGCCTTTTACACTGGTCCCACAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAGtaaggaacctcgatgaacttgttgcaccctttctttttttatctttggatatatcatttgttatacaacatgctttttgtttctgggttgattgctgattctttttctatttctcttcggcgattgtcccttcaaatgttgaaga

- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT