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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAAATATTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTACACTTCAATTTGTCACACCGATCTTAGCGCGTGGCGAGGCGTggtataaattaatctatataattaattagtatttatatataacctatgatcgtttattccaattaaaaccatattataagttgtttgtctcatagtattttgttttttgctttgttttcttttcttctcttgttgtgattgtgatcaaccaaa

Basic information

species Glycine max
transcript GLYMA18G42940.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298175918|gb|HO015323.1|HO015323
EST:     ATCCTCTACACTTCAATTTGTCACACCGATCTTAGCGCGTGGCGAGGCGT                         GAGCGAGGCTCAGCGTGCTTATCCTCGGATTTTGGGCCATGAAGCATCTG
genomic: ATCCTCTACACTTCAATTTGTCACACCGATCTTAGCGCGTGGCGAGGCGTggtataaatt ... atcaaccaaaGAGCGAGGCTCAGCGTGCTTATCCTCGGATTTTGGGCCATGAAGCATCTG
EST: gi|18041290|gb|BM309584.1|BM309584
EST:     ATCCTCTACACTTCAATTTGTCACACCGATCTTAGCGCGTGGCGAGGCGT                         GAGCGAGGCTCAGCGTGCTTATCCTCGGATTTTGGGCCATGAAGCATCTG
genomic: ATCCTCTACACTTCAATTTGTCACACCGATCTTAGCGCGTGGCGAGGCGTggtataaatt ... atcaaccaaaGAGCGAGGCTCAGCGTGCTTATCCTCGGATTTTGGGCCATGAAGCATCTG