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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTCTCAGGCTACAAAAACCGGTTTCAGAACTTTATTAGATGCCTACGTGAAATGGGTGATGAGgtaactttttctacttgttttttccatgtatgcacatgtttattttcctttacatttggtacttttgtatgttatcccaaaaattcatagaaaattttga...

Basic information

species Glycine max
transcript GLYMA18G42540.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425792|gb|CA937312.1|CA937312
EST:     AAAACCGGTTTCAGAACTTTATTAGATGCCTACGTGAAATGGGTGATGAG                         GTGATGGTCGTGACAACACATGA
genomic: AAAACCGGTTTCAGAACTTTATTAGATGCCTACGTGAAATGGGTGATGAGgtaacttttt ... ctctgtgtagGTGATGGTCGTGACAACACATGA
EST: gi|120494796|gb|EH222963.1|EH222963
EST:     AAAACCGGTTTCAGAACTTTATTAGATGCCTACGTGAAATGGGTGATGAG                         GTGATGGTCGTGACAACACATGAAGGAGTGCCACAGGAATTTTATGGAGCC
genomic: AAAACCGGTTTCAGAACTTTATTAGATGCCTACGTGAAATGGGTGATGAGgtaacttttt ... ctctgtgtagGTGATGGTCGTGACAACACATGAAGGAGTGCCACAGGAATTTTATGGAGCC
EST: gi|120491418|gb|EH219585.1|EH219585
EST:     AAAACCGGTTTCAGAACTTTATTAGATGCCTACGTGAAATGGGTGATGAG                         GTGATGGTCGTGACAACACATGAAGGAGTGCCACAGGAATTTTATGGAGCC
genomic: AAAACCGGTTTCAGAACTTTATTAGATGCCTACGTGAAATGGGTGATGAGgtaacttttt ... ctctgtgtagGTGATGGTCGTGACAACACATGAAGGAGTGCCACAGGAATTTTATGGAGCC