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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATATGACAAAGATCAAGATACCTTTCGCCATTACTTTCTTGTATTGCCCTGCTTACTATTGGCCCTATTAATCAACGAGAAATTCACATTTAAGGAGGttagtgtgcatctgctgttatgtgttttctccagactgtagtaactgttgtgctactatttacatgtccctttgactattttcaagagttgattgtgtaacttttgctcactttctgaaaatacacttatacattggttagg

Basic information

species Glycine max
transcript GLYMA18G35390.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208292242|gb|GE093392.1|GE093392
EST:     AAATTCACATTTAAGGAGG                         TGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAC
genomic: AAATTCACATTTAAGGAGGttagtgtgca ... attggttaggTGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAC
EST: gi|192319316|gb|FK009858.1|FK009858
EST:     CTGCTTACTATTGGCCCTATTAATCAACGAGAAATTCACATTTAAGGAGG                         TGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAC
genomic: CTGCTTACTATTGGCCCTATTAATCAACGAGAAATTCACATTTAAGGAGGttagtgtgca ... attggttaggTGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAC
EST: gi|207837745|gb|GD810289.1|GD810289
EST:     CCCTATTAATCAACGAGAAATTCACATTTAAGGAGG                         TGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAC
genomic: CCCTATTAATCAACGAGAAATTCACATTTAAGGAGGttagtgtgca ... attggttaggTGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAC
EST: gi|22929555|gb|BU546694.1|BU546694
EST:     CTGCTTACTATTGGCCCTATTAATCAACGAGAAATTCACATTTAAGGAGG                         TGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAC
genomic: CTGCTTACTATTGGCCCTATTAATCAACGAGAAATTCACATTTAAGGAGGttagtgtgca ... attggttaggTGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAC
EST: gi|208098571|gb|GD894390.1|GD894390
EST:     CTGCTTACTATTGGCCCTATTAATCAACGAGAAATTCACATTTAAGGAGG                         TGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAC
genomic: CTGCTTACTATTGGCCCTATTAATCAACGAGAAATTCACATTTAAGGAGGttagtgtgca ... attggttaggTGATGTGGACATTTTCCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCATATGACAAAGATCAAGATACCTTTCGCCATTACTTTCTTGTATTGCCCTGCTTACTATTGGCCCTATTAATCAACGAGAAATTCACATTTAAGGAGGttagtgtgcatctgctgttatgtgttttctccagactgtagtaactgttgtgctactatttacatgtccctttgactattttcaagagttgattgtgtaacttttgctcactttctgaaaatacacttatacattggttagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG