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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGTGGAAAAAGAGAAGCAGTGAATCCTGGGAAATGGAAAAGCAATCAGTTGATTGCACCTCAGTATTTGTTGAGCCCATGAAATGGATGCAAGCAGgtacttgtaaaattcccctcatattttattttcgataaaataacttgtcaaacttcacactaacactggatattgattgctttgaag

Basic information

species Glycine max
transcript GLYMA18G33560.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G33560.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g02430.t01 (Vitis vinifera), 5'ss of exon 4
------TTCAAGTGGAAAAAGAGAAGCAGTGAATCCTGGGAAATGGAAAAGCAATCAGTTGATTGCACCTCAGTATTTGTTGAGCCCATGAAATGGATGCAAGCAGgtacttgta-aaattcccctcatattttattt-----tcgataaaataacttgtcaaactt--cacactaacact-ggatattgattgctttgaag
      ||||| |||| |||||||||  ||||  ||||    |  |||||| || ||  ||| ||| ||||  ||||||| |||||||||||||||||||||||||||    ||  |||  |   |||||||||||||      | ||||| |   |  || ||  |  || ||||||  | ||||  ||| |  | || ||
AAATGCTTCAAATGGAGAAAGAGAAGTGGTGA--CCTG----ACAGAAAAGGAACCATCTGAGTGCTCCTCCATATTTGTAGAGCCCATGAAATGGATGCAAGCAGgtcagcgtctaaacccaagtcatattttatttaaaaacccataaatttgttcttctaaactagcagactaacctttggattgtgaattatatgcag