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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTCTTATGGTGATATAATAGACTGTGTTGCGTCTCATATGCAACATGCTTTTGATCATCCTCAACTGAAAGGACAAAAACCATTGgtatatataattatttttgttctttgttatttgtgtgttaggaaaaaaaatctcggtaatttttgtgcatgtttttgtgtgtag

Basic information

species Glycine max
transcript GLYMA18G20700.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G20700.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0127g00010.t01 (Vitis vinifera), 5'ss of exon 2
GAGTTCTTATGGTGATATAATAGACTGTGTTGCGTCTCATATGCAACATGCTTTTGATCATCCTCAACTGAAAGGACAAAAACCATTGgtatatataattattttt---gttctttgttatttgtgtgttaggaaaaaaaatctcggtaatttttgtgcatgtttttgtgtgtag--------------------------------------
 ||| || |||||||| | || || ||||||   |||||| ||||||  |||||||||||||| ||| | |||||||| |||||||||||| ||  | || || ||   |  |  | ||  || | |  |        |  | | || | | |   |  |    | |   ||                                         
-AGTCCTGATGGTGATCTGATTGATTGTGTTCTATCTCATCTGCAACCAGCTTTTGATCATCCACAATTAAAAGGACAGAAACCATTGgta-attcagtttttcttcccgaccaattttgattcttttctttttctttaggttttggaattctcattttagagctgtacatgggaattcgagcagcaagtgttcatttctgtcttgattgcag