Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCAGATACTTCACACACTATTAAGGCAATTTGCATTGTCCACAATGAGACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgtcatctaatgctagcttttactcattgagcctacacattttacatttataccttttattctctataaattgccagagcctcaaaatctatt...

Basic information

species Glycine max
transcript GLYMA18G14740.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G14740.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0009g03740.t01 (Vitis vinifera), 5'ss of exon 2
GCTTCAGATACTTCACACACTATTAAGGCAATTTGCATTGTCCACAATGAGACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtat--gtcatctaatgctagcttttactcattgagcctacacattttacatttataccttttattctctataaattgccagagcctcaaaatctatt-----------------
||  |||| |   ||||||||||||||||  |||| ||||| ||||||||||| || ||||| || |||||  | |||||   ||| ||   ||| || ||| || ||   |  ||||   |     || |        |      ||  |||   || |  | ||| | | ||||    | |       | |   ||| ||                 
GCAGCAGACAGAGCACACACTATTAAGGCTGTTTGTATTGTTCACAATGAGACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaattcattttctaggccacatcttcatctgcaaggaaacttcacattaggattctgtcattt-tccactattgggttctcatttttaacgttcttttttgtattgaaatatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5607077|gb|AI901175.1|AI901175
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|19347288|gb|BM892168.1|BM892168
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|8669960|gb|BE191067.1|BE191067
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCA                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|120531737|gb|EH259870.1|EH259870
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|192312355|gb|FK005359.1|FK005359
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|192312356|gb|FK005360.1|FK005360
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|6134794|gb|AW133187.1|AW133187
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|5607145|gb|AI901243.1|AI901243
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|9259656|gb|BE347803.1|BE347803
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|120533482|gb|EH261615.1|EH261615
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|13562627|gb|BG550847.1|BG550847
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|120532136|gb|EH260269.1|EH260269
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATCGGAGTGTCTTCTATT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGAT-GGAGTGTCTTCTATT
EST: gi|11412210|gb|BF424221.1|BF424221
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
EST: gi|19452389|gb|BM953799.1|BM953799
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCG                         ATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTCGgtgagtatgt ... ggacactcagATTCCTACCGGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCTATTT