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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTGATATGATAGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGGATCACTCAGTTTAATGCTAAGCATGGgtactttatattagttacacttacatcttacttgaatctgtagtcttatttttctgcttgaaggaggattaggtaaccggtagtatatagtcttgatttgtgtctttaactaaacaatttttttttattgattgttgcag

Basic information

species Glycine max
transcript GLYMA18G14670.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G14670.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 2
GACGTGATATGATAGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGGATCACTCAGTTTAATGCTAAGCATGGgtactttatattagttacacttacatcttacttgaatctgtagtctta--tttttctgcttgaaggaggattaggtaaccggt-------------agtatatagtcttgatttgtgtctttaacta--aacaatttttttttattgattgttgcag----
| ||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||||||| |||||| |||| |   | | ||| |  ||||||||||||||||  | | | ||   | || | |||  | |        |  | | ||    ||||||  ||||||   ||||| ||   | ||             || | ||       |||| ||   || | ||    ||   | |||||  || ||  | ||     
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgt-ttgtttgtttactccagtaacacttgatccattggttcaatttttaccttttctttttgaagattgattatgtgttctgttataaaatggaacaggacatcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16997246|gb|BM086618.1|BM086618
EST:     TTTGGGATACCCATCTTGGACAGGATCACTCAGTTTAATGCTAAGCATGG                         ACAAGGAAGAAATCCTTTGGCTTTGGTTTTGGCTCCAACTAGAGAA
genomic: TTTGGGATACCCATCTTGGACAGGATCACTCAGTTTAATGCTAAGCATGGgtactttata ... attgttgcagACAAGGAAGAAATCCTTTGGCTTTGGTTTTGGCTCCAACTAGAGAA