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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCAATCAGATTCCTCGGGTTTGACATCAAAGAtgtgagctttttgcatcattacataatggggttgtttttctttttttcttttctcttggtgtctggttttgaatctgaagcaatttttttttacta

Basic information

species Glycine max
transcript GLYMA18G12920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G12920.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCAATCAGATTCCTCGGGTTTGACATCAAAGAtgtgagctttttgcatcattacataatggggttgtttttctttttttctt-ttctcttggtgtctggttttgaatctgaagcaatttttttttacta
 |||||||||||||||| ||||| ||||| |||||||||||  || | |||||  |  |    ||||| ||   ||||||||| ||  | |||| | |||      || |     | | | |  |  | |||| ||  |    ||       ||  || ||      |    | |||   
-TTGTGACTTTGCTTGACTACGGAGCTGGAAATGTTCGGAGCATCCGCAATGCTCTTCGTCATCTCGGCTTCAGCATCAAAGACgtatg-ttttcgaatctaagtttattccttgtatatgtactgatctcttattggcaaaatgaaattgattacatttgggaacttgaaatgttag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193585490|gb|FK539476.1|FK539476
EST:     GTTCGGAGTGTCAGGAATGCAATCAGATTCCTCGGGTTTGACATCAAAGA                         TGTGCAAACTCCGCAAGATATTCTGAATGCAAGTCGGTTAGTTTTTCCTGG
genomic: GTTCGGAGTGTCAGGAATGCAATCAGATTCCTCGGGTTTGACATCAAAGAtgtgagcttt ... ttttttactaGGTGCAAACTCCGCAAGATATTCTGAATGCAAGTCGGTTAGTTTTTCCTGG