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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACCCAGCCGACAGCTGAATGCAAGTGAGTGTGTAGCCCGTGGTTGTGCTCTACAGTGTGCAATGCTCAGTCCTATTTACCGTGTGAGAGAATACGAGgtttgtgtatttatttttccaaatctattctcatcttatctttatgctataaatatatattgctgattagaattgagtttgtagatccttagaaatgtag...

Basic information

species Glycine max
transcript GLYMA18G11520.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G11520.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0090g00340.t01 (Vitis vinifera), 5'ss of exon 1
AGAACCCAGCCGACAGCTGAATGCAAGTGAGTGTGTAGCCCGTGGTTGTGCTCTACAGTGTGCAATGCTCAGTCCTATTTACCGTGTGAGAGAATACGAGgtttgtgtatttatttttccaaatctattctcatcttatctttatgctataaatatatattgctgattagaattgagtt-tgtagatccttagaaatgtag-
|||||||||  ||  |||||||| |||||| ||||| || ||||| |||||||| |||||||| ||||| |||||||||| ||| || ||||| |||||||||||| | |||  |     | | | |  |   ||   |   ||| | ||||||| || ||  |  |||  | |  ||  ||   ||   |    || ||  
AGAACCCAGAAGAACGCTGAATGTAAGTGAATGTGTGGCACGTGGATGTGCTCTTCAGTGTGCTATGCTTAGTCCTATTTTCCGGGTCAGAGATTACGAGgtttgtat-tttgatagaaaataacaacacctttcaggttcctat-ccataaataaatgttctttgttattactctgtggtgctaatatatttttatttaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19268689|gb|BM884945.1|BM884945
EST:     CTCTACAGTGTGCAATGCTCAGTCCTATTTACCGTGTGAGAGAATACGAG                         GTCAAGGATGTTATTCCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCA
genomic: CTCTACAGTGTGCAATGCTCAGTCCTATTTACCGTGTGAGAGAATACGAGgtttgtgtat ... gtctgttcagGTCAAGGATGTTATTCCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCA
EST: gi|17964108|gb|BM270848.1|BM270848
EST:     CTCTACAGTGTGCAATGCTCAGTCCTATTTACCGTGTGAGAGAATACGAG                         GTCAAGGATGTTATTCCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCA
genomic: CTCTACAGTGTGCAATGCTCAGTCCTATTTACCGTGTGAGAGAATACGAGgtttgtgtat ... gtctgttcagGTCAAGGATGTTATTCCCTTTTCAATTGGACTTTCATCAGATGAAGGTCCA