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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAACAATCTGAATTCCTTCCATTTATCATTGAGGACCACGTTGTTGGATTCATTCACAATGggtaaaatttacttcaattctttcttacctatgatagtggcaggtttgctggctaaacttcaaatagttca

Basic information

species Glycine max
transcript GLYMA18G08420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g04320.t01 (Vitis vinifera), 5'ss of exon 2
GGAGAAACAATCTGAATTCCTTCCATTTATCATTGAGGACCACGTTGTTGGATTCATTCACAATGggtaaaatttacttcaattctttcttacctatgatagtggcaggtttgctggctaaacttcaaa----tagttca--------------------------
 || || |||||||| |||||||||||| |||||||||||||    ||||| |  ||||| || |||||| ||   | |||||| | |      | | ||| |    |  ||  || ||  | |   ||    ||||| |                          
-GAAAAGCAATCTGACTTCCTTCCATTTGTCATTGAGGACCAAACCGTTGGCTATATTCATAAAGGgtaacatcaccatcaattatcttacttatgtaatacttaatgagttaatgacttgattgataacttgtagtttaagttccaacacaatttgcacagctga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10233168|gb|BE801986.1|BE801986
EST:     ATTCCTTCCATTTATCATTGAGGACCACGTTGTTGGATTCATTCACAATG                         GGTTTGTTGAGCATTTGAGAGGCTTTGGGAATGTGTTCATTTTCCCCAAAG
genomic: ATTCCTTCCATTTATCATTGAGGACCACGTTGTTGGATTCATTCACAATGggtaaaattt ... aaatagttcaGGTTTGTTGAGCATTTGAGAGGCTTTGGGAATGTGTTCATTTTCCCCAAAG
EST: gi|151400323|gb|EV270137.1|EV270137
EST:     ATTCCTTCCATTTATCATTGAGGACCACGTTGTTGGATTCATTCACAATG                         GGTTTGTTGAGCATTTGAGAGGCTTTGGGAATGTGTTCATTTTCCCCAAAG
genomic: ATTCCTTCCATTTATCATTGAGGACCACGTTGTTGGATTCATTCACAATGggtaaaattt ... aaatagttcaGGTTTGTTGAGCATTTGAGAGGCTTTGGGAATGTGTTCATTTTCCCCAAAG