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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGAGAAGAGGGTATATCAGCCCTGTGGAAAGGCATTGTTCCTGGTTTACACCGCCAATGTTTATATGGGGGCTTAAGAATTGGGTTATATGATCCTGtgagtataaatatctaactttcattgaataagactgtcattggaagaacatgggttgcacatttgaactgaatcatgaacagg

Basic information

species Glycine max
transcript GLYMA18G07540.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G07540.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G58970.2 (Arabidopsis thaliana), 5'ss of exon 2
-GCTAGAGAAGAGGGTATATCAGCCCTGTGGAAAGGCATTGTTCCTGGTTTACACCGCCAATGTTTATATGGGGGCTTAAGAATTGGGTTATATGATCCTGtgagtataaatatctaactttcattgaataagactgtcattggaagaacatgggttgcacatttgaactgaatcatgaacagg-----------------------------
 ||||||||||| ||||| ||||  || ||||||||  || || | ||  | || ||||||||| | ||||| |||||||| |||||||||||||| ||||||||| |    |  | | |||| ||   |    || |  || |       ||  ||  ||  |   |   | | ||                                    
AGCTAGAGAAGAAGGTATTTCAGGTCTTTGGAAAGGTGTTATTGCAGGACTTCATCGCCAATGTATCTATGGTGGCTTAAGGATTGGGTTATATGAGCCTgtgagtct---cacattattttccttctctggtgcttttttttgtg---tgtgttttatactctcttataaagttatatctgatggattgtttattttgctatatctgaatag

upper sequence: GLYMA18G07540.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g05940.t01 (Vitis vinifera), 5'ss of exon 2
-GCTAGAGAAGAGGGTATATCAGCCCTGTGGAAAGGCATTGTTCCTGGTTTACACCGCCAATGTTTATATGGGGGCTTAAGAATTGGGTTATATGATCCTGtgagtat-aaatatctaactttcattgaataagact--------gtcattggaagaacatgggttgcacatttgaac---tgaatcatgaacagg------------
 |||   ||||||||| |   ||| || ||||| |||||||| || || || || ||||||||| ||||||| || |||||||||||||| ||||||||||| ||| |  ||  | |  | |||| |||||   | |         | |||   |         ||      |||  |   ||| |||| |||| |            
TGCTTTGGAAGAGGGTTTGGTAGCACTTTGGAAGGGCATTGTACCGGGGTTGCATCGCCAATGTCTATATGGAGGTTTAAGAATTGGGTTGTATGATCCTgtaagttttgaacttttttccttcaatgaatgtaatttgatctttattattattattgttattattatttccttgttcctgtgattcattaacatgtatgcacaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022032|gb|BM093066.1|BM093066
EST:     TAAGAATTGGGTTATATGATCCTG                         TGAAAACATTTCTCGTTGGTAGTGCATTTGTTGGAGAGGTTCCGTTGTACC
genomic: TAAGAATTGGGTTATATGATCCTGtgagtataaa ... catgaacaggTGAAAACATTTCTCGTTGGTAGTGCATTTGTTGGAGAGGTTCCGTTGTACC