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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCCTTGTTTTATGCTGCTGTGCTTGCGGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAGgtgagtttgcattcttgccccatctgaattccttggacctttgtatacaacatatgtttcccacaactttaaaatgatacatttttcttaataattgtatgctgtgtgcag

Basic information

species Glycine max
transcript GLYMA18G07280.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 2
ATAGCCTTGTTTTATGCTGCTGTGCTTGCGGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAGgtgagtttgcattcttgccccatctgaattccttggacctttgtatacaacatatgtttcccacaactttaaaatga-tacatttttcttaataattgtatgctgtgtgcag
|| || ||||| |||| |||||||||||| || |||||||| ||||| ||||||||||||||||||||| || ||  |   ||   | |     | ||||| | ||        ||      ||| | |  | ||   | ||| |  ||   |    | |                  
ATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAGgtgtgtatgagtg--tgttgctttcatttaccttgaaact--------aatgctaatttgcaaggaattctgagtgagtgaatgcctacctacacag---------------