Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttccttttagcaacttttcatgttcactttgtccttaaatttttttttatgtttgttaaaaaatctttggtctgatttaacaacctaaccatttttacaactcatggattttttgca

Basic information

species Glycine max
transcript GLYMA18G06950.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193557934|gb|FK515817.1|FK515817
EST:     CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGAT                         GGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
genomic: CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttcc ... attttttgcaGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
EST: gi|298199350|gb|HO042713.1|HO042713
EST:     CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGAT                         GGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
genomic: CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttcc ... attttttgcaGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
EST: gi|23057231|gb|BU577906.1|BU577906
EST:     CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGAT                         GGAGAATTAGCCACAGGACTCACCATCAGAACCAT
genomic: CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttcc ... attttttgcaGGAGAATTAGCCACAGGACTCACCATCAGAACCAT
EST: gi|207793666|gb|GD766734.1|GD766734
EST:     CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGAT                         GGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
genomic: CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttcc ... attttttgcaGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
EST: gi|208332292|gb|GE129873.1|GE129873
EST:     CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGAT                         GGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
genomic: CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttcc ... attttttgcaGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
EST: gi|193364160|gb|FK332206.1|FK332206
EST:     CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGAT                         GGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
genomic: CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttcc ... attttttgcaGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
EST: gi|208064208|gb|GD864728.1|GD864728
EST:     CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGAT                         GGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
genomic: CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttcc ... attttttgcaGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
EST: gi|298163003|gb|HO011736.1|HO011736
EST:     CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGAT                         GGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
genomic: CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttcc ... attttttgcaGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
EST: gi|193567410|gb|FK524181.1|FK524181
EST:     ATTGTTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGAT                         GGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
genomic: ATTG-TGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttcc ... attttttgcaGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
EST: gi|298189099|gb|HO037502.1|HO037502
EST:     CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGAT                         GGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG
genomic: CATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttcc ... attttttgcaGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTCATGGAAGTTTTTCAAACAGTCCTTTGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATTCTTGTACCATACCATGGATggtcggttccttttagcaacttttcatgttcactttgtccttaaatttttttttatgtttgttaaaaaatctttggtctgatttaacaacctaaccatttttacaactcatggattttttgca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA