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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTTGCCTGTTTTGGTTTCCTCTTATGACTTTGCTACCCCAAATAAAGAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaaatgagttcatcaatttcagtggcttctatgtggcaaatgcctcttatgtctctatgggcccaattaggtttttgaaggcatgattgtaga...

Basic information

species Glycine max
transcript GLYMA18G05520.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701169|gb|BW652202.1|BW652202
EST:     GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
EST: gi|26045687|gb|CA783193.1|CA783193
EST:     GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
EST: gi|151412353|gb|EV282165.1|EV282165
EST:     GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
EST: gi|5687803|gb|AI940875.1|AI940875
EST:     AATTCAATGGCTGGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGAT                         -GTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATG
genomic: AATTCAATGGCT-GGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTG-Ttgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATG
EST: gi|208034657|gb|GD834231.1|GD834231
EST:     GGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
EST: gi|7326838|gb|AW620636.1|AW620636
EST:     GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
EST: gi|209701362|gb|BW655958.1|BW655958
EST:     GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGT                         TGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG
genomic: GAAATTCAATGGCTGGGGTCTGTCTTCACTGGCATCATCTTCTGTGTTGTtgtaagtaaa ... ccttcttgaaGGTTTATAGATTGACTGCTATTTTGAGTTCTCTGTTGTTCAAGGGATATGG