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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGAAATTTAAGTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAGgtgcaagtctatgaaatccgtgctttgtttcattggcaaataaaaatgcctattctgcctactaaccaaattcgtttgtgctgtttaatacccag

Basic information

species Glycine max
transcript GLYMA18G02430.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02430.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g01320.t01 (Vitis vinifera), 5'ss of exon 1
CCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGAAATTTAAGTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAGgtgcaagtctatgaaatccg---tgctttgtttcattggcaaataaaaatgccta-ttctgcctacta-accaaattcgtttgtgctgtttaatacccag-
|||||||||||| | |||||||||| ||||||||| ||||||   |  || | || |     |   |||||  |||   ||    ||  | || | ||||||| || |   | |  |      |||||| |||| |||| |  | |       |  ||| |  ||| |  | ||| ||   | |    |  |||       
CCACCAGATTAGCACGTGGGGAGAAAGCTTCAAAACTAATGGTTGTCCAAATACATCAGCATCCACAATTGCAGAGTTGGAAGCCAAACTAGACAATCAGgtgaaaattatttaggttttgtctgctttttttc-ttggtagttgactccattttcttccgattaccatgcaaaactcagctttatgatgaaattttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330131|gb|FK020491.1|FK020491
EST:     GTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAG                         TCAGAGGATGCTTCTCATGGTATACTGGGAGAGCCTAATAAGTATGACCAA
genomic: GTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAGgtgcaagtct ... taatacccagTCAGAGGATGCTTCTCATGGTATACTGGGAGAGCCTAATAAGTATGACCAA
EST: gi|254319399|gb|GR830639.1|GR830639
EST:     GTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAG                         TCAGAGGATGCTTCTCATGGTATACTGGGAGAGCCTAATAAGTATGACCAA
genomic: GTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAGgtgcaagtct ... taatacccagTCAGAGGATGCTTCTCATGGTATACTGGGAGAGCCTAATAAGTATGACCAA
EST: gi|254318232|gb|GR832400.1|GR832400
EST:     GTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAG                         TCAGAGGATGCTTCTCATGGTATACTGGGAGAGCCTAATAAGTATGACCAA
genomic: GTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAGgtgcaagtct ... taatacccagTCAGAGGATGCTTCTCATGGTATACTGGGAGAGCCTAATAAGTATGACCAA
EST: gi|209698357|gb|BW678075.1|BW678075
EST:     GTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAG                         TCAGAGGATGCTTCTCATGGTATACTGGGAGAGCCTAATAAGTATGACCAA
genomic: GTGCAGCCATGCCTCTAATTGATGAGACAGACATGAAGTTTGATAGTCAGgtgcaagtct ... taatacccagTCAGAGGATGCTTCTCATGGTATACTGGGAGAGCCTAATAAGTATGACCAA