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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTCTATTATGCTTTCCGATGTCTCTTATCTTCAAAGCAAGTTGAAGTTTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaatttttccttttgaacacatcctcttctaattgataagctgaagttttattatagatggttgtaacaaaataatggttttattgcctggccatg...

Basic information

species Glycine max
transcript GLYMA18G01590.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193692216|gb|FK631087.1|FK631087
EST:     TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG                         ACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT
EST: gi|193461786|gb|FK426327.1|FK426327
EST:     TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG                         ACAGAGAAAATAGAGTTGGAAACTA
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTA
EST: gi|193323930|gb|FK291678.1|FK291678
EST:     TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG                         ACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT
EST: gi|193490939|gb|FK454692.1|FK454692
EST:     TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG                         ACAGAGAAAATAGAGTTGGAGACTACTGTAGTGGATGAAACAAAGGAACGT
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT
EST: gi|208110510|gb|GD913114.1|GD913114
EST:     TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG                         ACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATG
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATG
EST: gi|193625662|gb|FK577902.1|FK577902
EST:     TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAG                         ACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT
genomic: TTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaattt ... attcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGTCTATTATGCTTTCCGATGTCTCTTATCTTCAAAGCAAGTTGAAGTTTCTTCAGCAGAAACATGTTATGTTGCTGGACACCTTAAAACAACTGGAGgtatcaatttttccttttgaacacatcctcttctaattgataagctgaagttttattatagatggttgtaacaaaataatggttttattgcctggccatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcttc