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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGCTCCCCTCTTCCTGTTATTTCTACAATGGATGGATTGTTCTTGTGCAGGCTTTCTCCATAGGTATCTCGACCTCTTCCACATACTTATTTACAAGgtatttatctatctatttgttactgttttggataataataatacctatagactacatatgtttgattcatggttttatgttgttgctctcatattttaccaaag

Basic information

species Glycine max
transcript GLYMA18G01460.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01460.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 2
CTTGGCTCCCCTCTTCCTGTTATTTCTACAATGGATGGATTGTTCTTGTGCAGGCTTTCTCCATAGGTATCTCGACCTCTTCCACATACTTATTTACAAGgtatttatctatctatt--tgttactgttt-tggataataataatacct-atagactacatatgtttgattcatggttttatgttgttgctctcatattttaccaaag--------------------------------------------------------------
|||||| ||  ||||  |||| || || || |||||||||||||| ||  |  || | ||||  | ||||||||| |||||||||||||| |||||||||||   |  || | ||||  ||||  | |||     | | |  ||   |  | | |  | |  || | | ||    | ||     | |   | |  |  | ||   ||                                                               
CTTGGCGCCAGTCTTTTTGTTTTTGCTCCAGTGGATGGATTGTTCATGCACGTGCCTACTCCCCAAGTATCTCGATCTCTTCCACATACTCATTTACAAGgttggttcctgtttattggtgttgatatttgcttctgacatgaaggtcagagaaatcagaagtgatggcttagcagattgccactttcatttttcttctgtaatgaaaccagacctcccacaaggtggctcatgaatgttttctgttggtttcgttcttatattctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311935|gb|BG405586.1|BG405586
EST:     CAGGCTTTCTCCATAGGTATCTCGACCTCTTCCACATACTTATTTACAAG                         GTACATAATGATGGTAGATCAATCATGCCTACTCATGGAAGGAAGGCTACC
genomic: CAGGCTTTCTCCATAGGTATCTCGACCTCTTCCACATACTTATTTACAAGgtatttatct ... tttaccaaagGTACATAATGATGGTAGATCAATCATGCCTACTCATGGAAGGAAGGCTACC
EST: gi|120530588|gb|EH258721.1|EH258721
EST:     CAGGCTTTCTCCATAGGTATCTCGACCTCTTCCACATACTTATTTACAAG                         GTACATAATGATGGTAGATCAATCATGCCTACTCATGGAAGGAAGGCTACC
genomic: CAGGCTTTCTCCATAGGTATCTCGACCTCTTCCACATACTTATTTACAAGgtatttatct ... tttaccaaagGTACATAATGATGGTAGATCAATCATGCCTACTCATGGAAGGAAGGCTACC