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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAACTCAGAAAGTGGAAGCGCCGGTTGCAGTGGTGACCGGAGCTTCCAGAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttcgcaaatccttgagcataatctgttagtgaacgattccctgttgcaagaaataaaataaacggttgacgattgttttttgtgaatttcacg...

Basic information

species Glycine max
transcript GLYMA18G01280.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5058145|gb|AI736621.1|AI736621
EST:     GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAG                         GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
genomic: GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttc ... tgtattgcagGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
EST: gi|213600146|gb|DB964310.1|DB964310
EST:     GAGGCATTGGCAAAGCGATTGCACTGTCGTTAGGTAAAGCAGGTTGCAAG                         GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
genomic: GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttc ... tgtattgcagGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
EST: gi|298177236|gb|HO023483.1|HO023483
EST:     GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAG                         GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
genomic: GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttc ... tgtattgcagGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
EST: gi|7042369|gb|AW472263.1|AW472263
EST:     GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAG                         GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
genomic: GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttc ... tgtattgcagGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
EST: gi|22540327|gb|BU090170.1|BU090170
EST:     AGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTTG-AAG                         GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGGAG-ANGGTT-CC
genomic: AGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTT-GCAAGgttcgtcttc ... tgtattgcagGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTG-AGGA-GGTTTCC
EST: gi|192334676|gb|FK025223.1|FK025223
EST:     GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAG                         GTTCTGGTCAACTATGTAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
genomic: GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttc ... tgtattgcagGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
EST: gi|298167992|gb|HO013255.1|HO013255
EST:     GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTGAAGCAGGTTGCAAG                         GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAG
genomic: GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttc ... tgtattgcagGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAG
EST: gi|192296853|gb|FG990229.1|FG990229
EST:     GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAG                         GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
genomic: GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttc ... tgtattgcagGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
EST: gi|298187125|gb|HO034274.1|HO034274
EST:     GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAG                         GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
genomic: GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttc ... tgtattgcagGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
EST: gi|19345915|gb|BM890795.1|BM890795
EST:     GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAG                         GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAAGAGGTTTCCAAG
genomic: GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttc ... tgtattgcagGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
EST: gi|192333774|gb|FK025497.1|FK025497
EST:     GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAG                         GTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG
genomic: GAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttc ... tgtattgcagGTTCTGGTCAACTATGCAAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCAACTCAGAAAGTGGAAGCGCCGGTTGCAGTGGTGACCGGAGCTTCCAGAGGCATTGGCAAAGCGATTGCACTGTCATTAGGTAAAGCAGGTTGCAAGgttcgtcttcgcaaatccttgagcataatctgttagtgaacgattccctgttgcaagaaataaaataaacggttgacgattgttttttgtgaatttcacg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataaa