Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccgttaccctctcttaatttgacaaaattcttaatacatgttatttattttctgtgtttatttatccgtcatttttcttcactcgaacgtaagtgtttgtcttttatgtgttgattttagcttaatttaatctaatacactgattgtgccatgttattgcag

Basic information

species Glycine max
transcript GLYMA18G01110.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 1
--GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccgttaccctctcttaatttgacaaaattcttaatacatgttatttattttctgtgtttatttatccgtcatttttcttcactcgaacgtaagtgtttgtcttttatgtgttgattttagcttaatttaatctaatacactgattgtgccatgttattgcag
   |     |          |   | |   |    |  | | | ||    |    | | | |  | ||   | | |  |  ||  |  |       |  ||||       | || |||||    |  ||   |||  ||| | ||  |    ||| | | |  |     |||   | | |      |||  ||    | | ||     
TTCTTCTTCATCTTCTTCTGCTTCATATGTCTGAAACATCTTATTTTTTATGTGTTTTTTCAGGT-GAAGTACTCCAGAGAACCGGACAACCCCACTAAGTgtaagcaccttcg-catttcatattgcttttacg--agtctctgcgtc---tgtttggttgctgagaaaatgagaccaaggtttttgaacgtagtgtttgataatt-

upper sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0010g03370.t01 (Vitis vinifera), 5'ss of exon 3
GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccgttaccctctcttaatttgacaaaattcttaatacatgttatttattttctgtgtttatttatccgtcatttttcttcactcgaacgtaagtgtttgtcttttatgtgttgattttagcttaatttaatctaatacactgattgtgccatgttattgcag
||||||||||||||||| || |||||||||||||||||||||  |    |     | |||             |||  | | | ||    | | ||| |   | |||  | ||        |  | |  ||  |  | |||   || ||||                                                       
GTGAAGTACTCCAGAGAGCCAGACAATCCCACCAAGTgtaagcacttcgatttcttgttagc-----------ctttttgcgttttgca-aatgtctctacctgtttggctgtagaggaaatgaaataaaaactcggagtt---ctgttata------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011275|gb|BG726206.1|BG726206
EST:     GCTATGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GCTATGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|305377802|gb|HO652033.1|HO652033
EST:     CGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: CGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|192318954|gb|FK009034.1|FK009034
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|193441154|gb|FK409975.1|FK409975
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|151411461|gb|EV281272.1|EV281272
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|15815139|gb|BI787414.1|BI787414
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|120529639|gb|EH257773.1|EH257773
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|192330707|gb|FK022320.1|FK022320
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|192297172|gb|FG988268.1|FG988268
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|6072248|gb|AW101635.1|AW101635
EST:     GAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|14126219|gb|BG790657.1|BG790657
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|21888291|gb|BQ741504.1|BQ741504
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|209706839|gb|BW653131.1|BW653131
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|16282501|gb|BI945051.1|BI945051
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|151394964|gb|EV264835.1|EV264835
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|17021507|gb|BM092541.1|BM092541
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|298172778|gb|HO020332.1|HO020332
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCTGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|12772612|gb|BG237466.1|BG237466
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|209706840|gb|BW653132.1|BW653132
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|22540234|gb|BU090077.1|BU090077
EST:     ATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: ATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|13788209|gb|BG650801.1|BG650801
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|192298114|gb|FG991394.1|FG991394
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|9258634|gb|BE346781.1|BE346781
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|14259571|gb|BG882479.1|BG882479
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|192322932|gb|FK016663.1|FK016663
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|9901461|gb|BE610429.1|BE610429
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|13181069|gb|BG352409.1|BG352409
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAA-GCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|37994771|gb|CF806360.1|CF806360
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|208071953|gb|GD867687.1|GD867687
EST:     AGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: AGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
EST: gi|6725501|gb|AW309900.1|AW309900
EST:     GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT                         CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG
genomic: GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTgtaagttccg ... gttattgcagCCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG