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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcatgctttcgttttatgttgttgtttgttttctttgattttcactttctgatgtttatggatactttccaacattgttgttgatacttgaaatt...

Basic information

species Glycine max
transcript GLYMA18G00920.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254326112|gb|GR840704.1|GR840704
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGTAATGTTAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcatg ... ttgtctgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGTAATGTTAATT
EST: gi|9440085|gb|BE440596.1|BE440596
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGTAATGTTAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcatg ... ttgtctgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGTAATGTTAATT
EST: gi|21994497|gb|BQ786025.1|BQ786025
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGTAATGTTAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcatg ... ttgtctgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGTAATGTTAATT
EST: gi|7589523|gb|AW705295.1|AW705295
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGTAATGTTAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcatg ... ttgtctgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGTAATGTTAATT
EST: gi|21887054|gb|BQ740267.1|BQ740267
EST:     GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG                         GTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGTAATGTTAATT
genomic: GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGgtgcgtcatg ... ttgtctgtagGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGTAATGTTAATT