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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgttggtactcttcactattcaccgcagtacttccttaccctaatttctcaattcttcgcgattctctctctctcgcag

Basic information

species Glycine max
transcript GLYMA17G37870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 1
-------------------GGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgttgg---tactcttcactattcaccgcagtacttccttaccctaatttctcaattcttcg---cgattctctctctct-cgcag
                   ||   ||| ||||| |||   |||||||||||||| ||||||||| | ||||| ||||| |||| |||||| ||||| || ||  |     |    | |||    || | ||   |   | |||    |     ||  |  |   ||||   |  |   | |||||
CAGGATGCTGCCGGATGGCGGCGCCGACGACGAGGAGCGGTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccgccaaaccctagctccctcggtctgtgactgccccctctcgcttatcatctgccccgatcggcaattcgtgcgcag

upper sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 1
-------------------GGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgttggtactcttcactattcaccgcagtacttccttaccctaatttctcaattcttcgcgattctctctctctcgcag-----------
                   ||    || ||||| |||   |||||||||||||| ||||||||| | ||||| ||||| |||| |||||| ||||| || ||  || ||| |    |       |   || |||  |||    ||  ||  | ||  |    | |  |  ||  ||             
GCGGATGCTCCCCGACGGCGGCGCTGACGACGAGGAGCGGTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAAAACGCCTTCTACATGCACCGCGCCCTCgtaagtcctcctgcggaactctacccccacctccccaccgc--ttcttccttcctcggtccgtgttccaatcgtgcgatttgggtgcag

upper sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 1
-------------------GGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgttggtactcttc---actattcaccgcagtacttccttaccctaatttctcaattcttcg-cgattctctctctctcgcag-----------
                   ||    || ||||| |||   |||||||||||||| ||||||||| | ||||| ||||| |||| |||||| || || || ||  |  | || |   ||||| | ||    | | | |   |      | ||   ||| |||     | |  |  ||  |||            
ACGGGTGCTCCCCGACGGCGGTGCTGACGACGAGGAGCGCTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTCgtaagccccctgcggaactatacccccacctgcctaccggctaccgctgcttccttcctcggtccgtgttccaatcatgcaatttgggcgcag

upper sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G75850.1 (Arabidopsis thaliana), 5'ss of exon 1
-------------------GGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgttggtactct-tcactattcaccgcagtacttccttaccct-aatttctcaattcttcgcgattctctctctctcgcag
                   ||| | || ||||| || || ||||| || || || |||||||| || ||||||||||| |||||||||||||||||  ||||  ||   || | | | | | |||  | | |  || |   |  || |    |   ||     |||| |   |||| |||
GAAGATGAGAACGCTCGCCGGAGTAGAAGACGAGGATAAGTGGCTGGCGGAAGGAATCGCCGGAATCCAGCACAACGCTTTCTTCATGCATCGCGCTTTGgtccgtttcctcttattttcctccgttgaattagctcatttttgatctgatgaaattttct--ttctattcgtctctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328523|gb|FK023541.1|FK023541
EST:     AGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTG                         GACGATAACAATCTCAGAGACGCTCTCAAATACTCCGCGCAGATGCTATCC
genomic: AGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgttggtactc ... tctctcgcagGACGATAACAATCTCAGAGACGCTCTCAAATACTCCGCGCAGATGCTATCC