1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTGGGGATGATGAGCAAGGGAAGTTGTTTGACCATAACATGAGCTCCAATGGAGTTGACCTCTCTAGACTCAGGAAGAAGAAAGGACACACAGCACAGGtttgccccatgtcacaaagattaggataaaatttagacgcattgtcttaagagtttttggtgttcccaagtttttttctaatcaaaattggagttttatc...
species | Glycine max |
transcript | GLYMA17G37040.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGAGTTGACCTCTCTAGACTCAGGAAGAAGAAAGGACACACAGCACAGT GTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGGCCCTGTCTCTEST: gi|57574958|gb|CX547933.1|CX547933
genomic: TGGAGTTGACCTCTCTAGACTCAGGAAGAAGAAAGGACACACAGCACAGGtttgccccat ... ttgtcacagtGTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGGCCCTGTCTCT
EST: TGGAGTTGACCTCTCTAGACTCAGGAAG-AGAAAGGACACACAGCACAGT GTGTTTG-TTGG-TGNATGACTTGGGAAACCGTACCATGCGGCCCTGTCTCEST: gi|192322660|gb|FK014997.1|FK014997
genomic: TGGAGTTGACCTCTCTAGACTCAGGAAGAAGAAAGGACACACAGCACAGGtttgccccat ... ttgtcacagtGTGTTTGTTTGGTTG-ATGACTTGGGAAACCGTACCATGCGGCCCTGTCTC
EST: TGGAGTTGACCTCTCTAGACTCAG-AAGAAGAAAGGACACACAGCACAGT GTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGGCCCTGTCTCTEST: gi|9819804|gb|BE555317.1|BE555317
genomic: TGGAGTTGACCTCTCTAGACTCAGGAAGAAGAAAGGACACACAGCACAGGtttgccccat ... ttgtcacagtGTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGGCCCTGTCTCT
EST: TGGAGTTGACCTCTCTAGACTCAGGAAGAAGAAAGGACACACAGCACAGT GTGTTTGTTTGGTTGATGACTTGGGAAACCATACCATGCAGCCCTGTCTCT
genomic: TGGAGTTGACCTCTCTAGACTCAGGAAGAAGAAAGGACACACAGCACAGGtttgccccat ... ttgtcacagtGTGTTTGTTTGGTTGATGACTTGGGAAACCGTACCATGCGGCCCTGTCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGGGATGATGAGCAAGGGAAGTTGTTTGACCATAACATGAGCTCCAATGGAGTTGACCTCTCTAGACTCAGGAAGAAGAAAGGACACACAGCACAGGtttgccccatgtcacaaagattaggataaaatttagacgcattgtcttaagagtttttggtgttcccaagtttttttctaatcaaaattggagttttatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggataaaa